RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PLCD4Q9BRC7 762 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 RTKNQ9BST9 563 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 TRMOQ9BU70 441 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 NTMT1Q9BV86 223 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 SHCBP1LQ9BZQ2 653 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 DRC3Q9H069 523 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 MID1IP1Q9NPA3 183 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 SEMA5BQ9P283 1151 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 PDP2Q9P2J9 529 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 ANKMY1Q9P2S6 941 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 STK38LQ9Y2H1 464 aa11.76□□□□□ -0.53
SDC1-206ENST00000482879 COL27A1Q8IZC6 1860 aaPredicted RBP11.76□□□□□ -0.53
SDC1-206ENST00000482879 UBFD1O14562 309 aaKnown RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 TOX3O15405 576 aaPredicted RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 MAP3K7O43318 606 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 ITM2AO43736 263 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 LYPLA1O75608 230 aaPredicted RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 WFS1O76024 890 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 CLDN9O95484 217 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 HSPA4LO95757 839 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 MT-CO3P00414 261 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 CHRNGP07510 517 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 EBLN1P0CF75 366 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 CXCR2P25025 360 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 GRK3P35626 688 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 PLA2G5P39877 138 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 CASP2P42575 452 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 SLC1A6P48664 564 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 INHBCP55103 352 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 PKNOX1P55347 436 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 ERVPABLB-1P60509 514 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 SH3BP2P78314 561 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 MEF2AQ02078 507 aaPredicted RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 ZFP36L1Q07352 338 aaKnown RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 BST1Q10588 318 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 TRAF3Q13114 568 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 LAPTM5Q13571 262 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 TRA2AQ13595 282 aaKnown RBP eCLIP11.75□□□□□ -0.53
SDC1-206ENST00000482879 SLBPQ14493 270 aaKnown RBP eCLIP11.75□□□□□ -0.53
SDC1-206ENST00000482879 TBCCQ15814 346 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 ZIC1Q15915 447 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 HIST2H2ACQ16777 129 aaPredicted RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 LIPJQ5W064 366 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 HIST2H2AA3Q6FI13 130 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 GPRIN3Q6ZVF9 776 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 ARHGAP22Q7Z5H3 698 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 B3GNT8Q7Z7M8 397 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 SYVN1Q86TM6 617 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 PAQR7Q86WK9 346 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 FAM129CQ86XR2 697 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 SLITRK4Q8IW52 837 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 LSMEM2Q8N112 164 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 KRT78Q8N1N4 520 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 C19orf47Q8N9M1 422 aaKnown RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 OR4F6Q8NGB9 312 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 OR4K1Q8NGD4 311 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 KLHL6Q8WZ60 621 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 WDR34Q96EX3 536 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 PTCD3Q96EY7 689 aaKnown RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 TCTN2Q96GX1 697 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 MAGEB18Q96M61 343 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 TMEM74Q96NL1 305 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 CDK15Q96Q40 435 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 EFCAB11Q9BUY7 163 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 EHD1Q9H4M9 534 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 ZNF395Q9H8N7 513 aaPredicted RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 EML4Q9HC35 981 aaKnown RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 PDE7BQ9NP56 450 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 GEMIN8Q9NWZ8 242 aaKnown RBP11.75□□□□□ -0.53
SDC1-206ENST00000482879 SOHLH2Q9NX45 425 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 RNF11Q9Y3C5 154 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 KLK4Q9Y5K2 254 aa11.75□□□□□ -0.53
SDC1-206ENST00000482879 PTPRBP23467 1997 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 SEC16AO15027 2179 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 A0A1B0GTL3 188 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 FEZF1A0PJY2 475 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 DCDC2BA2VCK2 349 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 OR2A25A4D2G3 310 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 AGRPO00253 132 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 KLF11O14901 512 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 HAT1O14929 419 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 POLR3GO15318 223 aaPredicted RBP11.74□□□□□ -0.53
SDC1-206ENST00000482879 NRP2O60462 931 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 UGDHO60701 494 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 DKK1O94907 266 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 OR4F21O95013 312 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 ESRRBO95718 433 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 ANKRD34CP0C6C1 535 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 CD22P20273 847 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 ARRB2P32121 409 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 MDH1P40925 334 aaKnown RBP11.74□□□□□ -0.53
SDC1-206ENST00000482879 HNF4AP41235 474 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 MLLT3P42568 568 aaPredicted RBP11.74□□□□□ -0.53
SDC1-206ENST00000482879 CLDN6P56747 220 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 HSD11B2P80365 405 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 REEP5Q00765 189 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 GUCY1A3Q02108 690 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 GALNT1Q10472 559 aaPredicted RBP11.74□□□□□ -0.53
SDC1-206ENST00000482879 E2F2Q14209 437 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 RBBP5Q15291 538 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms