RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 TRA2AQ13595 282 aaKnown RBP eCLIP6.71□□□□□ -1.34
LIMD1-204ENST00000474665 CEP85LQ5SZL2 805 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 LGSNQ5TDP6 509 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 ICE2Q659A1 982 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 ZNF787Q6DD87 383 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 FBXO42Q6P3S6 717 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 TTC23LQ6PF05 361 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 RAB11FIP2Q7L804 512 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 EXOC3L1Q86VI1 746 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 PAQR7Q86WK9 346 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 SRRM1Q8IYB3 904 aaKnown RBP6.71□□□□□ -1.34
LIMD1-204ENST00000474665 RIBC1Q8N443 379 aaPredicted RBP6.71□□□□□ -1.34
LIMD1-204ENST00000474665 DNAJC22Q8N4W6 341 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 UBTD2Q8WUN7 234 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 EXT2Q93063 718 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 ARL8AQ96BM9 186 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 MOCOSQ96EN8 888 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 RNF31Q96EP0 1072 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 TMEM74Q96NL1 305 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 FCRL4Q96PJ5 515 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 MIPEPQ99797 713 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 MRPL57Q9BQC6 102 aaKnown RBP6.71□□□□□ -1.34
LIMD1-204ENST00000474665 DPH7Q9BTV6 452 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 SPRY4Q9C004 299 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 CHRNA10Q9GZZ6 450 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 SPNS1Q9H2V7 528 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 APMAPQ9HDC9 416 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 ASCL3Q9NQ33 180 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 ACSS2Q9NR19 701 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 C1GALT1Q9NS00 363 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 NUDT4Q9NZJ9 180 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 TAC3Q9UHF0 121 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 PILRAQ9UKJ1 303 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 RNF112Q9ULX5 631 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 SATB2Q9UPW6 733 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 SLC22A14Q9Y267 594 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 LOXL2Q9Y4K0 774 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 PCDHB11Q9Y5F2 797 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 SETD2Q9BYW2 2564 aaPredicted RBP6.71□□□□□ -1.34
LIMD1-204ENST00000474665 ICE1Q9Y2F5 2266 aa6.71□□□□□ -1.34
LIMD1-204ENST00000474665 CCDC187A0A096LP49 1063 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 UQCRHLA0A096LP55 91 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 LOC105369274A0A096LPK9 316 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 LOC102723532A0A0G2JNH3 316 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 EFCAB7A8K855 629 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SUPT3HB4E1H0 165 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 C9orf172C9J069 976 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 H7BY64 318 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PPP6CO00743 305 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PLD2O14939 933 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PLIN3O60664 434 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SUPT3HO75486 399 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 RASSF9O75901 435 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 MED26O95402 600 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 TIAF1O95411 115 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ZBTB11O95625 1053 aaPredicted RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ITGB2P05107 769 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 UQCRHP07919 91 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 GSTA1P08263 222 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ANXA5P08758 320 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 RBP1P09455 135 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 HIST1H2AGP0C0S8 130 aaPredicted RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CD22P20273 847 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 HIST1H2ADP20671 130 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CDH3P22223 829 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 RPA3P35244 121 aaPredicted RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 GCGRP47871 477 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 HSPA7P48741 367 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PPM1FP49593 454 aaPredicted RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CSNK1G2P78368 415 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 HSD11B2P80365 405 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 FOXK1P85037 733 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 MC2RQ01718 297 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 TSTA3Q13630 321 aaPredicted RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SETDB1Q15047 1291 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SF1Q15637 639 aaKnown RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 GPR19Q15760 415 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PFKFB4Q16877 469 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 TSNAXIP1Q2TAA8 658 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 DEFB110Q30KQ9 67 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 C3orf38Q5JPI3 329 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CATSPEREQ5SY80 951 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PRAMEF17Q5VTA0 474 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PRAMEF13Q5VWM6 474 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CES4AQ5XG92 561 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SULT1C3Q6IMI6 304 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 FRMPD2BQ6IN97 320 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ARMC6Q6NXE6 501 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 FIGLAQ6QHK4 219 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 LCTLQ6UWM7 567 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 SLCO4C1Q6ZQN7 724 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 RPS27LQ71UM5 84 aaKnown RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 THOC6Q86W42 341 aaKnown RBP6.7□□□□□ -1.34
LIMD1-204ENST00000474665 KMT5CQ86Y97 462 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 PLD3Q8IV08 490 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 OR4N4Q8N0Y3 316 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 CARFQ8N187 725 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 FBXO39Q8N4B4 442 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 ARHGEF39Q8N4T4 335 aa6.7□□□□□ -1.34
LIMD1-204ENST00000474665 C19orf47Q8N9M1 422 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms