RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 CSNK1A1LQ8N752 337 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 AMER3Q8N944 861 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 COL26A1Q96A83 441 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 C19orf60Q96EN9 201 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 SEMA3GQ9NS98 782 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 SH2B3Q9UQQ2 575 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 PDE10AQ9Y233 779 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 CSAG2Q9Y5P2 127 aa17.68■□□□□ 0.42
COL7A1-209ENST00000474432 ZNF839A8K0R7 811 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 TCP11X1B4DZS4 312 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 FFAR3O14843 346 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 HAT1O14929 419 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 GPR42O15529 346 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 VPS4BO75351 444 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 VPS26AO75436 327 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 TSPAN12O95859 305 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 EZRP15311 586 aaKnown RBP17.67■□□□□ 0.42
COL7A1-209ENST00000474432 EFNA3P52797 238 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 PGGT1BP53609 377 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 SPANXN3Q5MJ09 141 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 ATG9BQ674R7 924 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 IGFL2Q6UWQ7 119 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 Q6ZS92 163 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 SHISA5Q8N114 240 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 EFCAB3Q8N7B9 438 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 SNRNP40Q96DI7 357 aaKnown RBP17.67■□□□□ 0.42
COL7A1-209ENST00000474432 PSMG3-AS1Q96PY0 264 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 SLAMF7Q9NQ25 335 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 ZNF282Q9UDV7 671 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-209ENST00000474432 VPS4AQ9UN37 437 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 B3GNT3Q9Y2A9 372 aa17.67■□□□□ 0.42
COL7A1-209ENST00000474432 MRPS2Q9Y399 296 aaKnown RBP17.67■□□□□ 0.42
COL7A1-209ENST00000474432 SPTBN1Q01082 2364 aaKnown RBP17.66■□□□□ 0.42
COL7A1-209ENST00000474432 H7BY64 318 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 CCNDBP1O95273 360 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 TTC4O95801 387 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 ITGA3P26006 1051 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 SLC26A3P40879 764 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 CARSP49589 748 aaKnown RBP17.66■□□□□ 0.42
COL7A1-209ENST00000474432 DSG2Q14126 1118 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 RBBP7Q16576 425 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 BBS9Q3SYG4 887 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 TEDDM1Q5T9Z0 273 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 TRMT10BQ6PF06 316 aaKnown RBP17.66■□□□□ 0.42
COL7A1-209ENST00000474432 MBOAT1Q6ZNC8 495 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 VN1R4Q7Z5H5 301 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 PCGF5Q86SE9 256 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 PRSS58Q8IYP2 241 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 MIEF2Q96C03 454 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 MVB12AQ96EY5 273 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 CERS2Q96G23 380 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 CABS1Q96KC9 395 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 PRAP1Q96NZ9 151 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 CRB3Q9BUF7 120 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 ABCF3Q9NUQ8 709 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 TRMT6Q9UJA5 497 aaKnown RBP17.66■□□□□ 0.42
COL7A1-209ENST00000474432 NTNG1Q9Y2I2 539 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 ICE1Q9Y2F5 2266 aa17.66■□□□□ 0.42
COL7A1-209ENST00000474432 ALPPP05187 535 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 FBLP22087 321 aaKnown RBP17.65■□□□□ 0.42
COL7A1-209ENST00000474432 ELK3P41970 407 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 TBPL1P62380 186 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 PHKG1Q16816 387 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 TUBB8Q3ZCM7 444 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 HP1BP3Q5SSJ5 553 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-209ENST00000474432 GARNL3Q5VVW2 1013 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 STEAP4Q687X5 459 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 HIBCHQ6NVY1 386 aaPredicted RBP17.65■□□□□ 0.42
COL7A1-209ENST00000474432 KIAA0408Q6ZU52 694 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 GALNT7Q86SF2 657 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 CUZD1Q86UP6 607 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 PARP9Q8IXQ6 854 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 AMER2Q8N7J2 671 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 C8orf44Q96CB5 159 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 PDLIM2Q96JY6 352 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 CAPZA3Q96KX2 299 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 BARD1Q99728 777 aaKnown RBP17.65■□□□□ 0.42
COL7A1-209ENST00000474432 NAT9Q9BTE0 207 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 ASF1BQ9NVP2 202 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 C3orf18Q9UK00 162 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 TEX264Q9Y6I9 313 aa17.65■□□□□ 0.42
COL7A1-209ENST00000474432 A0A1W2PQ72 361 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 KLHL41O60662 606 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 IPO13O94829 963 aaKnown RBP17.64■□□□□ 0.41
COL7A1-209ENST00000474432 STATHP02808 62 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 CSNK1G2P78368 415 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 OCA2Q04671 838 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 MRPL49Q13405 166 aaKnown RBP17.64■□□□□ 0.41
COL7A1-209ENST00000474432 MORF4L2Q15014 288 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 SYT16Q17RD7 645 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 AGTRAPQ6RW13 159 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 KLHL7Q8IXQ5 586 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 CISD2Q8N5K1 135 aaKnown RBP17.64■□□□□ 0.41
COL7A1-209ENST00000474432 CCDC138Q96M89 665 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 TRIM51Q9BSJ1 452 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 TGIF2Q9GZN2 237 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 PARVBQ9HBI1 364 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 TMEM184CQ9NVA4 438 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 TAS2R13Q9NYV9 303 aa17.64■□□□□ 0.41
COL7A1-209ENST00000474432 TRPC4Q9UBN4 977 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms