RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ATP5D	P30049	168 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	MYL7	Q01449	175 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	GPR33	Q49SQ1	333 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	GTDC1	Q4AE62	458 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	ANKRD20A4	Q4UJ75	823 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	ANKRD20A8P	Q5CZ79	823 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	ANKRD20A2	Q5SQ80	823 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	ANKRD20A1	Q5TYW2	823 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	ANKRD20A3	Q5VUR7	823 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	CYB5D1	Q6P9G0	228 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	BTNL8	Q6UX41	500 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	KLHDC8B	Q8IXV7	354 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	RCOR2	Q8IZ40	523 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	APCDD1	Q8J025	514 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	NIPA2	Q8N8Q9	360 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	AMER3	Q8N944	861 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	KBTBD8	Q8NFY9	601 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR1L3	Q8NH93	324 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	NCOA7	Q8NI08	942 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	FIBIN	Q8TAL6	211 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	PIK3R3	Q92569	461 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	TSACC	Q96A04	125 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	ATP6V1E2	Q96A05	226 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	PYCR2	Q96C36	320 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	FBXO17	Q96EF6	278 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	VMP1	Q96GC9	406 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	C10orf90	Q96M02	699 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	FAM49A	Q9H0Q0	323 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	ATP13A3	Q9H7F0	1226 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	PPAN	Q9NQ55	473 aa	Known RBP	3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	C19orf25	Q9UFG5	118 aa	Predicted RBP	3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	KIAA1217	Q5T5P2	1943 aa		3.4	□□□□□ -1.87
PTCD3-209	ENST00000472044	PRR23A	A6NEV1	266 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	TRMU	O75648	421 aa	Known RBP	3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	TGDS	O95455	350 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	MOCS2	O96007	188 aa	Predicted RBP	3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	RLN1	P04808	185 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	CEBPB	P17676	345 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	LBP	P18428	481 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	LHCGR	P22888	699 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	IRX6	P78412	446 aa	Predicted RBP	3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	OPCML	Q14982	345 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	E2F5	Q15329	346 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	ZNF876P	Q49A33	203 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	ARHGEF16	Q5VV41	709 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	CTR9	Q6PD62	1173 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLC25A47	Q6Q0C1	308 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	TMEM207	Q6UWW9	146 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	NHLRC1	Q6VVB1	395 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	OTOA	Q7RTW8	1153 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	CPEB2	Q7Z5Q1	589 aa	Known RBP	3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	CCDC60	Q8IWA6	550 aa	Predicted RBP	3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	KLHL7	Q8IXQ5	586 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR7A2P	Q8NGA2	310 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	OR10G8	Q8NGN5	311 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	AFAP1L1	Q8TED9	768 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	SUSD6	Q92537	303 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	EXOC4	Q96A65	974 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	SGF29	Q96ES7	293 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	NAF1	Q96HR8	494 aa	Known RBP	3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	CDK19	Q9BWU1	502 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	TUFT1	Q9NNX1	390 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	SLCO1C1	Q9NYB5	712 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	GAB2	Q9UQC2	676 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044		R4GN57	208 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044	IGSF1	Q8N6C5	1336 aa		3.39	□□□□□ -1.87
PTCD3-209	ENST00000472044		A0A087WW49	117 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044		A0A0B4J203	849 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044		A4D1N5	150 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	SDR42E2	A6NKP2	422 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	HHLA1	C9JL84	531 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	NPIPA3	F8WFD2	350 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044		H0YAE9	185 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	CCL24	O00175	119 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	EXTL3	O43909	919 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	CDC123	O75794	336 aa	Predicted RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	IGKV3-20	P01619	116 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	RAF1	P04049	648 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	ATP1B1	P05026	303 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	ANKRD34C	P0C6C1	535 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	CFC1B	P0CG36	223 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	CFC1	P0CG37	223 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	STAG3L1	P0CL83	205 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	KRT3	P12035	628 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	F3	P13726	295 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	SFTPD	P35247	375 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	CETN2	P41208	172 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	NR0B1	P51843	470 aa	Known RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	YWHAH	Q04917	246 aa	Predicted RBP	3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	IL10RB	Q08334	325 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	ITGA9	Q13797	1035 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	EXT1	Q16394	746 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	TMEM30B	Q3MIR4	351 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	FUT10	Q6P4F1	479 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	LEKR1	Q6ZMV7	388 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	GBP6	Q6ZN66	633 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	NOTCH2NL	Q7Z3S9	236 aa		3.38	□□□□□ -1.87
PTCD3-209	ENST00000472044	PIWIL3	Q7Z3Z3	882 aa	Known RBP	3.38	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms