RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 SLC5A11Q8WWX8 675 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 SH3KBP1Q96B97 665 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 GRAMD1AQ96CP6 724 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 MED8Q96G25 268 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 PRAP1Q96NZ9 151 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 EGFL8Q99944 293 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 DPH7Q9BTV6 452 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 TRMOQ9BU70 441 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 TRIM54Q9BYV2 358 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 KLHL25Q9H0H3 589 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 RHBGQ9H310 441 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 LRRN3Q9H3W5 708 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 NT5DC2Q9H857 520 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 PELI2Q9HAT8 420 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 CCDC177Q9NQR7 707 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-207ENST00000471342 NCDNQ9UBB6 729 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 OPTCQ9UBM4 332 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 WASF3Q9UPY6 502 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.49□□□□□ -0.89
SF3A1-207ENST00000471342 RAP2CQ9Y3L5 183 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 PCDHB11Q9Y5F2 797 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 ENTPD2Q9Y5L3 495 aa9.49□□□□□ -0.89
SF3A1-207ENST00000471342 GOLGA4Q13439 2230 aaKnown RBP9.48□□□□□ -0.89
SF3A1-207ENST00000471342 CPED1A4D0V7 1026 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 SLC9B1P1A6NJY1 282 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 PCNX2A6NKB5 2137 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 P2RX6O15547 441 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 HYAL3O43820 417 aaPredicted RBP9.48□□□□□ -0.89
SF3A1-207ENST00000471342 UGDHO60701 494 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 GP1BAP07359 652 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 CAPN1P07384 714 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 THRAP10827 490 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 MAGP20916 626 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 ALDH4A1P30038 563 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 GPLD1P80108 840 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 ABATP80404 500 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 TBL3Q12788 808 aaKnown RBP9.48□□□□□ -0.89
SF3A1-207ENST00000471342 ABRAXAS2Q15018 415 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 ADPRMQ3LIE5 342 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 HSP90B2PQ58FF3 399 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 FRMPD2BQ6IN97 320 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 TMEM71Q6P5X7 295 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 FIGLAQ6QHK4 219 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 TRIM46Q7Z4K8 759 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 PIGWQ7Z7B1 504 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 WDR75Q8IWA0 830 aaKnown RBP9.48□□□□□ -0.89
SF3A1-207ENST00000471342 ARFGAP2Q8N6H7 521 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 AMER3Q8N944 861 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 OR7G3Q8NG95 312 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 ZNF473Q8WTR7 871 aaKnown RBP9.48□□□□□ -0.89
SF3A1-207ENST00000471342 FCRL1Q96LA6 429 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 SLC38A3Q99624 504 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 PAIP2Q9BPZ3 127 aaKnown RBP9.48□□□□□ -0.89
SF3A1-207ENST00000471342 MACROD1Q9BQ69 325 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 HAUS8Q9BT25 410 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 RAB11FIP5Q9BXF6 653 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.48□□□□□ -0.89
SF3A1-207ENST00000471342 TMEM184CQ9NVA4 438 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 KCNK4Q9NYG8 393 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 GIMAP2Q9UG22 337 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 TRPS1Q9UHF7 1281 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 LNPEPQ9UIQ6 1025 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 MID2Q9UJV3 735 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 DOLKQ9UPQ8 538 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 MRPS2Q9Y399 296 aaKnown RBP9.48□□□□□ -0.89
SF3A1-207ENST00000471342 TRAF6Q9Y4K3 522 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 CEP250Q9BV73 2442 aa9.48□□□□□ -0.89
SF3A1-207ENST00000471342 SNRNP200O75643 2136 aaKnown RBP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 A0A0J9YY10 115 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 FEZF1A0PJY2 475 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 RHPN2P1A8MT19 583 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 C2orf74A8MZ97 194 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 ISM1B1AKI9 464 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 MANBAO00462 879 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 SDHDO14521 159 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 H2AFYO75367 372 aaKnown RBP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 KATNA1O75449 491 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 TGDSO95455 350 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 RPLP0P05388 317 aaKnown RBP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 ANKRD34CP0C6C1 535 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 MSL3P1P0C860 447 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 ALPPL2P10696 532 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 FOLR1P15328 257 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 EPB42P16452 691 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 GNAZP19086 355 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 CSRP1P21291 193 aaKnown RBP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 CCND1P24385 295 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 ZFP36L2P47974 494 aaKnown RBP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 PKNOX1P55347 436 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 BTKQ06187 659 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 COL9A2Q14055 689 aaPredicted RBP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 SLBPQ14493 270 aaKnown RBP eCLIP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 C16orf72Q14CZ0 275 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 ZRSR2Q15696 482 aaKnown RBP9.47□□□□□ -0.89
SF3A1-207ENST00000471342 PRTGQ2VWP7 1150 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 SLC9B1Q4ZJI4 515 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 VWA5B1Q5TIE3 1220 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 LIPJQ5W064 366 aa9.47□□□□□ -0.89
SF3A1-207ENST00000471342 EPGNQ6UW88 154 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms