RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 NUDT9Q9BW91 350 aa12.91□□□□□ -0.34
HMGN1-211ENST00000471260 MRPS30Q9NP92 439 aaKnown RBP12.91□□□□□ -0.34
HMGN1-211ENST00000471260 P4HTMQ9NXG6 502 aa12.91□□□□□ -0.34
HMGN1-211ENST00000471260 FBXO5Q9UKT4 447 aa12.91□□□□□ -0.34
HMGN1-211ENST00000471260 SPENQ96T58 3664 aaKnown RBP12.91□□□□□ -0.34
HMGN1-211ENST00000471260 HYKKA2RU49 373 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 GFYI3L273 518 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 SMAPO00193 183 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 DNALI1O14645 258 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 CNOT3O75175 753 aaKnown RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 SORBS2O94875 1100 aaKnown RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 PGAM1P18669 254 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 ITGAXP20702 1163 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 RPA3P35244 121 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 SKIV2L2P42285 1042 aaKnown RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 PNLIPRP1P54315 467 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 MLLT10P55197 1068 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 VSX2P58304 361 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 ABATP80404 500 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 PRDX1Q06830 199 aaKnown RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 FASTKQ14296 549 aaKnown RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 MYBPC3Q14896 1274 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 SLC9A5Q14940 896 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 NKG7Q16617 165 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 MUM1Q2TAK8 710 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 KRT71Q3SY84 523 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 FBXO42Q6P3S6 717 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 IGFL3Q6UXB1 125 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 CYHR1Q6ZMK1 362 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 TRMT10CQ7L0Y3 403 aaKnown RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 KCNMB4Q86W47 210 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 GALNT16Q8N428 558 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 EFCAB3Q8N7B9 438 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 CPT1CQ8TCG5 803 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 ZNF473Q8WTR7 871 aaKnown RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 MVB12AQ96EY5 273 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 PLCD4Q9BRC7 762 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 DPH7Q9BTV6 452 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 ATP13A2Q9NQ11 1180 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 FBXO6Q9NRD1 293 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-211ENST00000471260 SEMA3GQ9NS98 782 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 WHRNQ9P202 907 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 MED16Q9Y2X0 877 aa12.9□□□□□ -0.34
HMGN1-211ENST00000471260 CCDC88CQ9P219 2028 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 TNRC6AQ8NDV7 1962 aaKnown RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 A0A0J9YVX5 310 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 CLEC18AA5D8T8 446 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 A6NL46 340 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 VSTM2BA6NLU5 285 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 TXNDC9O14530 226 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 VPS4BO75351 444 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 SLC16A8O95907 504 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ERVK-10P10266 1014 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 HRH2P25021 359 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 AIMP2Q13155 320 aaKnown RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 UBAP2LQ14157 1087 aaKnown RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 NADK2Q4G0N4 442 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 HSP90AA5PQ58FG0 334 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 SPANXN3Q5MJ09 141 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 GARNL3Q5VVW2 1013 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ICE2Q659A1 982 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 FRMPD2BQ6IN97 320 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 JMJD6Q6NYC1 403 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ZNF549Q6P9A3 640 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 CLEC18BQ6UXF7 455 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 KIAA0408Q6ZU52 694 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 COX15Q7KZN9 410 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 PPP1R32Q7Z5V6 425 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 AGGF1Q8N302 714 aaeCLIP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 CLEC18CQ8NCF0 446 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 GALNT11Q8NCW6 608 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 BBOF1Q8ND07 529 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 GIMAP7Q8NHV1 300 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 CD200R1Q8TD46 325 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ZNF480Q8WV37 535 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 TM9SF4Q92544 642 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 PNPLA2Q96AD5 504 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 PKP4Q99569 1192 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 SPSB2Q99619 263 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 SLC30A3Q99726 388 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 EBNA1BP2Q99848 306 aaKnown RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 TRIM51Q9BSJ1 452 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 AARSD1Q9BTE6 412 aaKnown RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ROPN1BQ9BZX4 212 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 CCDC134Q9H6E4 229 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ROPN1Q9HAT0 212 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ZNF304Q9HCX3 659 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 GRHL1Q9NZI5 618 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ZC3H7BQ9UGR2 993 aaKnown RBP12.89□□□□□ -0.35
HMGN1-211ENST00000471260 ASIC3Q9UHC3 531 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 VPS4AQ9UN37 437 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 CDC14AQ9UNH5 594 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 RELNP78509 3460 aa12.89□□□□□ -0.35
HMGN1-211ENST00000471260 LOC105369274A0A096LPK9 316 aa12.88□□□□□ -0.35
HMGN1-211ENST00000471260 LOC102723532A0A0G2JNH3 316 aa12.88□□□□□ -0.35
HMGN1-211ENST00000471260 GMNCA6NCL1 334 aa12.88□□□□□ -0.35
HMGN1-211ENST00000471260 KRT87PA6NCN2 255 aa12.88□□□□□ -0.35
HMGN1-211ENST00000471260 E7ENX8 843 aa12.88□□□□□ -0.35
HMGN1-211ENST00000471260 PRPF4O43172 522 aaKnown RBP eCLIP12.88□□□□□ -0.35
HMGN1-211ENST00000471260 HAUS5O94927 633 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms