RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 GPR4P46093 362 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ARHGDIAP52565 204 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 MTTPP55157 894 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 GPX6P59796 221 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 SELENOVP59797 346 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 WDR5P61964 334 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 EEF1A1P68104 462 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 EEF1A2Q05639 463 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ITGB3BPQ13352 177 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ATP1A4Q13733 1029 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 HNRNPA1L2Q32P51 320 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF585BQ52M93 769 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 HIKESHIQ53FT3 197 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ZNF311Q5JNZ3 666 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 EARS2Q5JPH6 523 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 THEM4Q5T1C6 240 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 AGBL2Q5U5Z8 902 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 EEF1A1P5Q5VTE0 462 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 PRAMEF8Q5VWM4 474 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ZDHHC20Q5W0Z9 365 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 PLAG1Q6DJT9 500 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 BRAT1Q6PJG6 821 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 CLEC17AQ6ZS10 378 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM57BQ71RH2 274 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 TFAP2DQ7Z6R9 452 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ABI3BPQ7Z7G0 1075 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 NRROSQ86YC3 692 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 TIGD4Q8IY51 512 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 DSELQ8IZU8 1212 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 TRPV3Q8NET8 790 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 CFAP61Q8NHU2 1237 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 OCC1Q8TAD7 63 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 CD300LFQ8TDQ1 290 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 DNAAF4Q8WXU2 420 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 KIAA1143Q96AT1 154 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 GRAMD1AQ96CP6 724 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ARSGQ96EG1 525 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC41A3Q96GZ6 507 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 APOLD1Q96LR9 279 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 LRFN5Q96NI6 719 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 PCYT2Q99447 389 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 RBM4BQ9BQ04 359 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 SELENOSQ9BQE4 189 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 INPP5KQ9BT40 448 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 RBM4Q9BWF3 364 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 UPF3BQ9BZI7 483 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 DCLK3Q9C098 648 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 S1PR5Q9H228 398 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 SAP30LQ9HAJ7 183 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 OLAHQ9NV23 265 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 ALKBH4Q9NXW9 302 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 RCOR3Q9P2K3 495 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 CHRNA9Q9UGM1 479 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 MKLN1Q9UL63 735 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 HPSEQ9Y251 543 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 KCNK6Q9Y257 313 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 TTC21AQ8NDW8 1320 aa4.66□□□□□ -1.66
CCDC88A-210ENST00000468534 KANK1Q14678 1352 aa4.65□□□□□ -1.66
CCDC88A-210ENST00000468534 NINLQ9Y2I6 1382 aa4.65□□□□□ -1.66
CCDC88A-210ENST00000468534 PNMA6EA0A0J9YXQ4 647 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 A0A0U1RQJ8 604 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 A0A1W2PPC1 479 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 NPIPB13A6NJU9 1138 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 TMEM210A6NLX4 147 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 YDJCA8MPS7 323 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 MEI4A8MW99 385 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 SUPT3HB4E1H0 165 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 NPIPB4C9JG80 1138 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF701M0R085 212 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 RAD51BO15315 384 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF264O43296 627 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 ATP6V1G1O75348 118 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 NME6O75414 186 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 TMCC1O94876 653 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 NDUFB8O95169 186 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 CELF2O95319 508 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 GH1P01241 217 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 CXCL10P02778 98 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 ST6GAL1P15907 406 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 RPA2P15927 270 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 NCF2P19878 526 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 PTNP21246 168 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 POU1F1P28069 291 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 CCND3P30281 292 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 MAT2AP31153 395 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 CPOXP36551 454 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 STX17P56962 302 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 GSDMDP57764 484 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 YWHAEP62258 255 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 RAE1P78406 368 aaKnown RBP4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 B4GALNT1Q00973 533 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 FADDQ13158 208 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC39A14Q15043 492 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 PON2Q15165 354 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 PDK4Q16654 411 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 DPCR1Q3MIW9 517 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 LRRC24Q50LG9 513 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 IFI44LQ53G44 452 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 PHYHD1Q5SRE7 291 aa4.65□□□□□ -1.67
CCDC88A-210ENST00000468534 LRRC38Q5VT99 294 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms