RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 VPS11Q9H270 941 aa19.46■□□□□ 0.71
SKA3-205ENST00000465471 ACTR5Q9H9F9 607 aaPredicted RBP19.46■□□□□ 0.71
SKA3-205ENST00000465471 PCMTD2Q9NV79 361 aa19.46■□□□□ 0.71
SKA3-205ENST00000465471 ITPR1Q14643 2758 aa19.46■□□□□ 0.71
SKA3-205ENST00000465471 LOC105369274A0A096LPK9 316 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 LOC102723532A0A0G2JNH3 316 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 A0A0J9YVX5 310 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 IQANK1A0A1B0GTG1 560 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 H7BY64 318 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 IPO13O94829 963 aaKnown RBP19.45■□□□□ 0.7
SKA3-205ENST00000465471 TUBBP07437 444 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 CDH1P12830 882 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 CSNK1G2P78368 415 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 SRSF6Q13247 344 aaKnown RBP19.45■□□□□ 0.7
SKA3-205ENST00000465471 NAA30Q147X3 362 aaPredicted RBP19.45■□□□□ 0.7
SKA3-205ENST00000465471 TECRLQ5HYJ1 363 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 RHBDD2Q6NTF9 364 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 DSELQ8IZU8 1212 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 OR4N4Q8N0Y3 316 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 MREGQ8N565 214 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 OR4K1Q8NGD4 311 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 UBTD2Q8WUN7 234 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 ALKBH8Q96BT7 664 aaKnown RBP19.45■□□□□ 0.7
SKA3-205ENST00000465471 CABS1Q96KC9 395 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 PRAP1Q96NZ9 151 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 CCNL2Q96S94 520 aaPredicted RBP19.45■□□□□ 0.7
SKA3-205ENST00000465471 SARGQ9BW04 601 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 LHX9Q9NQ69 397 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 SRPK3Q9UPE1 567 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 SLC22A14Q9Y267 594 aa19.45■□□□□ 0.7
SKA3-205ENST00000465471 LOC101059948A0A1B0GTJ6 334 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 EFSO43281 561 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 KLK8O60259 260 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 HBQ1P09105 142 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 GLRBP48167 497 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 UCNP55089 124 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 KLC3Q6P597 504 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 VASH2Q86V25 355 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 IL22RA1Q8N6P7 574 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 ZNF655Q8N720 491 aaPredicted RBP19.44■□□□□ 0.7
SKA3-205ENST00000465471 SLC5A11Q8WWX8 675 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 NEIL2Q969S2 332 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 AKIRIN1Q9H9L7 192 aaPredicted RBP19.44■□□□□ 0.7
SKA3-205ENST00000465471 ZNF358Q9NW07 568 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 WWOXQ9NZC7 414 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 CD274Q9NZQ7 290 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 PADI1Q9ULC6 663 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 SEC16AO15027 2179 aa19.44■□□□□ 0.7
SKA3-205ENST00000465471 KCNE1BA0A087WTH5 132 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 SYCE1LA8MT33 242 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 H0YGG7 62 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 UBXN8O00124 270 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 MEN1O00255 615 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 WT1P19544 449 aaPredicted RBP19.43■□□□□ 0.7
SKA3-205ENST00000465471 GDF5P43026 501 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 VSX2P58304 361 aaPredicted RBP19.43■□□□□ 0.7
SKA3-205ENST00000465471 ARF3P61204 181 aaPredicted RBP19.43■□□□□ 0.7
SKA3-205ENST00000465471 TSNAXIP1Q2TAA8 658 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 PRTGQ2VWP7 1150 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 MANEAQ5SRI9 462 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 YOD1Q5VVQ6 348 aaPredicted RBP19.43■□□□□ 0.7
SKA3-205ENST00000465471 BROXQ5VW32 411 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 ADCK2Q7Z695 626 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 ARHGEF39Q8N4T4 335 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 PROKR1Q8TCW9 393 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 ACMSDQ8TDX5 336 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 SNRNP27Q8WVK2 155 aaKnown RBP19.43■□□□□ 0.7
SKA3-205ENST00000465471 EXT2Q93063 718 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 CNOT10Q9H9A5 744 aaKnown RBP19.43■□□□□ 0.7
SKA3-205ENST00000465471 PELI2Q9HAT8 420 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 ASB1Q9Y576 335 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 KCNE2Q9Y6J6 123 aa19.43■□□□□ 0.7
SKA3-205ENST00000465471 SUPT3HB4E1H0 165 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 MAP2K7O14733 419 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 SUPT3HO75486 399 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 STK16O75716 305 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 WDR47O94967 919 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 S100BP04271 92 aaPredicted RBP19.42■□□□□ 0.7
SKA3-205ENST00000465471 CCNYL3P0C7X3 344 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 LIFP15018 202 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 HSPA7P48741 367 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 CCR8P51685 355 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 RPS15AP62244 130 aaKnown RBP19.42■□□□□ 0.7
SKA3-205ENST00000465471 GRM7Q14831 915 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 WASHC2DQ5SRD0 308 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 CATSPEREQ5SY80 951 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 VN1R4Q7Z5H5 301 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 LCA5Q86VQ0 697 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 PLD3Q8IV08 490 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 EPS8L3Q8TE67 593 aaKnown RBP19.42■□□□□ 0.7
SKA3-205ENST00000465471 HNRNPLLQ8WVV9 542 aaKnown RBP19.42■□□□□ 0.7
SKA3-205ENST00000465471 CLIP3Q96DZ5 547 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 THAP11Q96EK4 314 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 TSNARE1Q96NA8 513 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 GBP5Q96PP8 586 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 DPH2Q9BQC3 489 aaPredicted RBP19.42■□□□□ 0.7
SKA3-205ENST00000465471 GPRC5BQ9NZH0 403 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 TBK1Q9UHD2 729 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 CROTQ9UKG9 612 aa19.42■□□□□ 0.7
SKA3-205ENST00000465471 DYRK1BQ9Y463 629 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms