RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 RIC8BQ9NVN3 520 aa21.48■■□□□ 1.03
USP4-208ENST00000464168 DCHS2Q6V1P9 2916 aa21.48■■□□□ 1.03
USP4-208ENST00000464168 GOLGA8KD6RF30 607 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 GOLGA8TH3BQL2 631 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 FOXS1O43638 330 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 PSIP1O75475 530 aaKnown RBP21.47■■□□□ 1.03
USP4-208ENST00000464168 ESR1P03372 595 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 ITGAMP11215 1152 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 ELAVL4P26378 380 aaKnown RBP21.47■■□□□ 1.03
USP4-208ENST00000464168 RPA3P35244 121 aaPredicted RBP21.47■■□□□ 1.03
USP4-208ENST00000464168 EFNA3P52797 238 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 PRDX1Q06830 199 aaKnown RBP21.47■■□□□ 1.03
USP4-208ENST00000464168 ART3Q13508 389 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 ARHGAP19Q14CB8 494 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 PCOLCEQ15113 449 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 SIX1Q15475 284 aaPredicted RBP21.47■■□□□ 1.03
USP4-208ENST00000464168 GARNL3Q5VVW2 1013 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 MCEMP1Q8IX19 187 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 ITLN2Q8WWU7 325 aaPredicted RBP21.47■■□□□ 1.03
USP4-208ENST00000464168 TCF12Q99081 682 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP21.47■■□□□ 1.03
USP4-208ENST00000464168 ZNF700Q9H0M5 742 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 CRYL1Q9Y2S2 319 aa21.47■■□□□ 1.03
USP4-208ENST00000464168 H3BMM5 538 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 CHRM3P20309 590 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 MGAT1P26572 445 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 MST1P26927 711 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 GRNP28799 593 aaKnown RBP21.46■■□□□ 1.03
USP4-208ENST00000464168 ADARP55265 1226 aaKnown RBP21.46■■□□□ 1.03
USP4-208ENST00000464168 SRSF11Q05519 484 aaKnown RBP21.46■■□□□ 1.03
USP4-208ENST00000464168 CCNG2Q16589 344 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 SYT16Q17RD7 645 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 KLHL38Q2WGJ6 581 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 TMEM205Q6UW68 189 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 ZC3H7AQ8IWR0 971 aaKnown RBP21.46■■□□□ 1.03
USP4-208ENST00000464168 IMMP1LQ96LU5 166 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 PKP4Q99569 1192 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 RNF32Q9H0A6 362 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 SYBUQ9NX95 663 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 ABI3Q9P2A4 366 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 TAC3Q9UHF0 121 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 DRG1Q9Y295 367 aaKnown RBP21.46■■□□□ 1.03
USP4-208ENST00000464168 CSMD2Q7Z408 3487 aa21.46■■□□□ 1.03
USP4-208ENST00000464168 A0A0A6YYC8 382 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 I3L1I5 382 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 AP3B1O00203 1094 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 ANXA5P08758 320 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 PKMP14618 531 aaKnown RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 PNLIPRP1P54315 467 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 SNRPNP63162 240 aaKnown RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 BASP1P80723 227 aaKnown RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 RELAQ04206 551 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 TSTA3Q13630 321 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 NAA30Q147X3 362 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 RNF187Q5TA31 235 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 ICE2Q659A1 982 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 HIBCHQ6NVY1 386 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 DRICH1Q6PGQ1 229 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 TMEM207Q6UWW9 146 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 RERGQ96A58 199 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 DRC3Q9H069 523 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 RBSNQ9H1K0 784 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 FAM114A2Q9NRY5 505 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 MKL2Q9ULH7 1088 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 KLF2Q9Y5W3 355 aaPredicted RBP21.45■■□□□ 1.02
USP4-208ENST00000464168 PKDREJQ9NTG1 2253 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 PCNX1Q96RV3 2341 aa21.45■■□□□ 1.02
USP4-208ENST00000464168 HEATR5BQ9P2D3 2071 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 P2RX6O15547 441 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 UNC5CO95185 931 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 RASAL1O95294 804 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 SLC16A8O95907 504 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 UQCRHP07919 91 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 ICAM2P13598 275 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 EZRP15311 586 aaKnown RBP21.44■■□□□ 1.02
USP4-208ENST00000464168 HSD17B2P37059 387 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 C4orf22Q6V702 233 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 PPFIBP2Q8ND30 876 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 DNAJB8Q8NHS0 232 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 MOCOSQ96EN8 888 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 STMN3Q9NZ72 180 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 PCYOX1Q9UHG3 505 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 SOX13Q9UN79 622 aa21.44■■□□□ 1.02
USP4-208ENST00000464168 TRGV8A0A0C4DH27 118 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 E7ENX8 843 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 TXNDC9O14530 226 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 PFDN6O15212 129 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 CRYABP02511 175 aaKnown RBP21.43■■□□□ 1.02
USP4-208ENST00000464168 CATP04040 527 aaKnown RBP21.43■■□□□ 1.02
USP4-208ENST00000464168 POU3F2P20265 443 aaPredicted RBP21.43■■□□□ 1.02
USP4-208ENST00000464168 MAT1AQ00266 395 aaKnown RBP21.43■■□□□ 1.02
USP4-208ENST00000464168 TAP2Q03519 686 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 FAM53BQ14153 422 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 KCNJ11Q14654 390 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 ABHD17BQ5VST6 288 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 CENPUQ71F23 418 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 REXO1L1PQ8IX06 675 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 ZNF480Q8WV37 535 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 CCDC120Q96HB5 630 aa21.43■■□□□ 1.02
USP4-208ENST00000464168 SLC30A3Q99726 388 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms