RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 TMED5Q9Y3A6 229 aa12.07□□□□□ -0.48
HDAC4-208ENST00000463007 OR51B4Q9Y5P0 310 aa12.07□□□□□ -0.48
HDAC4-208ENST00000463007 EVPLLA8MZ36 301 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 H7C0S8 307 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 IFRD1O00458 451 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 TAPBPO15533 448 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 TLL1O43897 1013 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 PRAMEF1O95521 474 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 HOXD10P28358 340 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 PPP5CP53041 499 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 CBX2Q14781 532 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 TIGD6Q17RP2 521 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 SERPINA9Q86WD7 417 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 LSRQ86X29 649 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 CCDC71Q8IV32 467 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 REM2Q8IYK8 340 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 SETD9Q8NE22 299 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 ADAMTS19Q8TE59 1207 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 VOPP1Q96AW1 172 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 CEP19Q96LK0 163 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 MTERF1Q99551 399 aaKnown RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 CENPOQ9BU64 300 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 ELOVL6Q9H5J4 265 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 NEK6Q9HC98 313 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 ARL15Q9NXU5 204 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 CTDSP2O14595 271 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 FZD6O60353 706 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 SCELO95171 688 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 PDYNP01213 254 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 CCDC159P0C7I6 412 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 RPS14P62263 151 aaKnown RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 TRIM60Q495X7 471 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 RUNDC3AQ59EK9 446 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 RNF219Q5W0B1 726 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 THOC7Q6I9Y2 204 aaKnown RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 CCDC80Q76M96 950 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 TMEM132CQ8N3T6 1108 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 RAET1EQ8TD07 263 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 ITPKCQ96DU7 683 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 REEP1Q9H902 201 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 HMX1Q9NP08 348 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 KIAA1522Q9P206 1035 aaPredicted RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 A0A1B0GVM2 712 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 TBKBP1A7MCY6 615 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 PDZK1P1A8MUH7 402 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 UPK1BO75841 260 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 HPRP00739 348 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 RHOCP08134 193 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 EPB42P16452 691 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 ENGP17813 658 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 RPL17P18621 184 aaKnown RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 TGM4P49221 684 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 SLC11A2P49281 568 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 GABARAPL2P60520 117 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 MXD1Q05195 221 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 LRIT3Q3SXY7 679 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 TCAIMQ8N3R3 496 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 SLAIN1Q8ND83 568 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 HSH2DQ96JZ2 352 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 CEP44Q9C0F1 390 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 THUMPD1Q9NXG2 353 aaKnown RBP12.06□□□□□ -0.48
HDAC4-208ENST00000463007 EHD3Q9NZN3 535 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 LHX3Q9UBR4 397 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 RAPGEFL1Q9UHV5 662 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 SLC6A14Q9UN76 642 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 RNF6Q9Y252 685 aa12.06□□□□□ -0.48
HDAC4-208ENST00000463007 ARNTLO00327 626 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 MTX2O75431 263 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 GBAP04062 536 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 CORO1AP31146 461 aaKnown RBP12.05□□□□□ -0.48
HDAC4-208ENST00000463007 CA8P35219 290 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 EIF2DP41214 584 aaKnown RBP12.05□□□□□ -0.48
HDAC4-208ENST00000463007 GRIK2Q13002 908 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 USP39Q53GS9 565 aaKnown RBP12.05□□□□□ -0.48
HDAC4-208ENST00000463007 HECTD3Q5T447 861 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 C11orf74Q86VG3 221 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 STX19Q8N4C7 294 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 PJA1Q8NG27 643 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 ALG14Q96F25 216 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 TRIM39Q9HCM9 518 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 FABP3P05413 133 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 OR1D2P34982 312 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 MAD2L1BPQ15013 274 aaPredicted RBP12.05□□□□□ -0.48
HDAC4-208ENST00000463007 ADGRF1Q5T601 910 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 ZNF783Q6ZMS7 281 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 VASH1Q7L8A9 365 aaPredicted RBP12.05□□□□□ -0.48
HDAC4-208ENST00000463007 METTL4Q8N3J2 472 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 CARNMT1Q8N4J0 409 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 PARP16Q8N5Y8 322 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 GTPBP3Q969Y2 492 aaKnown RBP12.05□□□□□ -0.48
HDAC4-208ENST00000463007 EID2BQ96D98 161 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 YIPF6Q96EC8 236 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 APIPQ96GX9 242 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 NECTIN4Q96NY8 510 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 SH3GL1Q99961 368 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 TTYH2Q9BSA4 534 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 FAM126AQ9BYI3 521 aaPredicted RBP12.05□□□□□ -0.48
HDAC4-208ENST00000463007 ACPTQ9BZG2 426 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 NUAK2Q9H093 628 aa12.05□□□□□ -0.48
HDAC4-208ENST00000463007 NECTIN3Q9NQS3 549 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms