RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 TGM6O95932 706 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 MT-CYBP00156 380 aaPredicted RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 C1RP00736 705 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 IGLV3-25P01717 112 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 MT-ND1P03886 318 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 MTHFD1P11586 935 aaKnown RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 PRPS2P11908 318 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 HTR1EP28566 365 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 MAXP61244 160 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 BCL2L1Q07817 233 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 SEMA3AQ14563 771 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 CLPPQ16740 277 aaPredicted RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TSTD2Q5T7W7 516 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 OTUD1Q5VV17 481 aaPredicted RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 KHDRBS2Q5VWX1 349 aaKnown RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TMEM198Q66K66 360 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 ADGRD2Q7Z7M1 963 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 CFAP52Q8N1V2 620 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 LSM14AQ8ND56 463 aaKnown RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TBC1D15Q8TC07 691 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 STYXQ8WUJ0 223 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 SLC13A3Q8WWT9 602 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 DEDD2Q8WXF8 326 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TFAP2CQ92754 450 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TMIGD2Q96BF3 282 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 MFSD3Q96ES6 412 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TRMT2BQ96GJ1 504 aaKnown RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 SPATA9Q9BWV2 254 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 DRGXA6NNA5 263 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 ZNF879B4DU55 563 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 INMT-MINDY4F8WBC2 141 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 L7N2F9 121 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 ATXN8OSP0DMR3 200 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 HSD17B1P14061 328 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TNNI3P19429 210 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 ENDOUP21128 410 aaKnown RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 ELK4P28324 431 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 MAP2K3P46734 347 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 PTPN5P54829 565 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 PPP3R1P63098 170 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 DSC2Q02487 901 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 SYT16Q17RD7 645 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 AP5B1Q2VPB7 878 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 KIAA1614Q5VZ46 1190 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 ADNP2Q6IQ32 1131 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 PEG10Q86TG7 708 aaKnown RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TMEM135Q86UB9 458 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TCEAL8Q8IYN2 117 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 CHPFQ8IZ52 775 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 MINDY1Q8N5J2 469 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 KREMEN2Q8NCW0 462 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 PJA1Q8NG27 643 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 HEXDCQ8WVB3 486 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 BADQ92934 168 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 PEX13Q92968 403 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 RFKQ969G6 155 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TXNDC15Q96J42 360 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 MAPKAP1Q9BPZ7 522 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 TTYH2Q9BSA4 534 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 NLNQ9BYT8 704 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 LRTM1Q9HBL6 345 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 POLE4Q9NR33 117 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 GPN3Q9UHW5 284 aaPredicted RBP6.03□□□□□ -1.44
VPS13D-202ENST00000460333 RIMS3Q9UJD0 308 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 ANK1P16157 1881 aa6.03□□□□□ -1.44
VPS13D-202ENST00000460333 ANKRD34BA5PLL1 514 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 MID1O15344 667 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 INSIG1O15503 277 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 KDELR3O43731 214 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 SGTAO43765 313 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 KDM4BO94953 1096 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 FOSL1P15407 271 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 TSPAN8P19075 237 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 LPOP22079 712 aaPredicted RBP6.02□□□□□ -1.45
VPS13D-202ENST00000460333 SLC6A2P23975 617 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 RPS5P46782 204 aaKnown RBP6.02□□□□□ -1.45
VPS13D-202ENST00000460333 LEPRP48357 1165 aaKnown RBP6.02□□□□□ -1.45
VPS13D-202ENST00000460333 SNRPD1P62314 119 aaKnown RBP6.02□□□□□ -1.45
VPS13D-202ENST00000460333 HERVK_113P63132 956 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 RPA4Q13156 261 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 APOFQ13790 326 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 PITRM1Q5JRX3 1037 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 C1QTNF12Q5T7M4 302 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 C1orf53Q5VUE5 145 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 CLEC6AQ6EIG7 209 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 OR2T5Q6IEZ7 315 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 FBXL19Q6PCT2 694 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 USP30Q70CQ3 517 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 COMMD7Q86VX2 200 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 CARM1Q86X55 608 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 VWA5B2Q8N398 1253 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 OR2T29Q8NH02 315 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 BRSK1Q8TDC3 778 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 ADAMTS16Q8TE57 1224 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 ASB12Q8WXK4 309 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 SUSD6Q92537 303 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 RHBDF1Q96CC6 855 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 EXOC2Q96KP1 924 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 QRFPRQ96P65 431 aa6.02□□□□□ -1.45
VPS13D-202ENST00000460333 ERVK-6Q9BXR3 956 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms