RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 USP51Q70EK9 711 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 ZNF467Q7Z7K2 595 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 ADAMTSL2Q86TH1 951 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 GTF2IRD2Q86UP8 949 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CCDC71Q8IV32 467 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 FAM20CQ8IXL6 584 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 STX19Q8N4C7 294 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 PACRGLQ8N7B6 248 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 ZFP41Q8N8Y5 198 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 PYURFQ96I23 114 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 HIST1H2AHQ96KK5 128 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 C1orf74Q96LT6 269 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 ASB2Q96Q27 587 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 HIST1H2AJQ99878 128 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 MACROD1Q9BQ69 325 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 H2AFJQ9BTM1 129 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 WRAP53Q9BUR4 548 aaKnown RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 PRR14Q9BWN1 585 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 OR51B5Q9H339 312 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 REEP1Q9H902 201 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 COQ3Q9NZJ6 369 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 IL17CQ9P0M4 197 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 DHRS7Q9Y394 339 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 A0A0G2JMZ2 1700 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 LRRC37A2A6NM11 1700 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 KPNA4O00629 521 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 NRG2O14511 850 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 SNPHO15079 494 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 ANKRD28O15084 1053 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 RGS10O43665 173 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 TLL1O43897 1013 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 COQ9O75208 318 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CLDN9O95484 217 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CD160O95971 181 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CAV3P56539 151 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 PPP2R2BQ00005 443 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 GSTM4Q03013 218 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 TYSND1Q2T9J0 566 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 RPS26P11Q5JNZ5 115 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 ALG1LQ6GMV1 187 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 SLC24A5Q71RS6 500 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 SHFQ7M4L6 423 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 OTOP2Q7RTS6 562 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 NAGSQ8N159 534 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 TCAIMQ8N3R3 496 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 TMEM132CQ8N3T6 1108 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 TEX26Q8N6G2 289 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 C1orf52Q8N6N3 182 aaKnown RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 CHST14Q8NCH0 376 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 SUN5Q8TC36 379 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 RAB8BQ92930 207 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 PPP3R2Q96LZ3 170 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 MGME1Q9BQP7 344 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 TRIM62Q9BVG3 475 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CD244Q9BZW8 370 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 KAT8Q9H7Z6 458 aaKnown RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 QPCTLQ9NXS2 382 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 TRPM5Q9NZQ8 1165 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 CXXC1Q9P0U4 656 aaPredicted RBP8.39□□□□□ -1.07
USP40-203ENST00000427112 NEUROG3Q9Y4Z2 214 aa8.39□□□□□ -1.07
USP40-203ENST00000427112 GLTPD2A6NH11 291 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 WBP4O75554 376 aaKnown RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 JRKO75564 520 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ETHE1O95571 254 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 NTN1O95631 604 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CAPNS1P04632 268 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 KIR3DL1P43629 444 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 RACK1P63244 317 aaKnown RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 GALNT1Q10472 559 aaPredicted RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 CNTN1Q12860 1018 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ZMAT1Q5H9K5 638 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 OR2T5Q6IEZ7 315 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 TNFAIP8L2Q6P589 184 aaPredicted RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 Q6ZVL8 140 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 GHDCQ8N2G8 530 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 OR2T29Q8NH02 315 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 FKBP10Q96AY3 582 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 IL17FQ96PD4 163 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 YIPF4Q9BSR8 244 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 CNPPD1Q9BV87 410 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 BRINP2Q9C0B6 783 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 FAM124BQ9H5Z6 455 aaPredicted RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 PDFQ9HBH1 243 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 TIGARQ9NQ88 270 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ABCB8Q9NUT2 735 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 TOR4AQ9NXH8 423 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 EHD3Q9NZN3 535 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 KIAA1522Q9P206 1035 aaPredicted RBP8.38□□□□□ -1.07
USP40-203ENST00000427112 IL20RAQ9UHF4 553 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 ENPP5Q9UJA9 477 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 LAMA1P25391 3075 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 PLXNB2O15031 1838 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 TSC2P49815 1807 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 A0A1B0GVC2 190 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 A6NIN4 97 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 NOTOA8MTQ0 251 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 E7EQ34 232 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 AQP9O43315 295 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 VPS4BO75351 444 aa8.38□□□□□ -1.07
USP40-203ENST00000427112 SULT1C4O75897 302 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms