RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ERVK-8P63133 956 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 PRDX1Q06830 199 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 BNIP3Q12983 259 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CUL3Q13618 768 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CYLC2Q14093 348 aaPredicted RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 SQLEQ14534 574 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 NAA25Q14CX7 972 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 TBCCQ15814 346 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 MMEL1Q495T6 779 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 LACTB2Q53H82 288 aaPredicted RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 GK5Q6ZS86 529 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CHSY3Q70JA7 882 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 TRIM46Q7Z4K8 759 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 SLC9B2Q86UD5 537 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 TRIM73Q86UV7 250 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 KRT78Q8N1N4 520 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 MIER2Q8N344 545 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 OR2A1Q8NGT9 310 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CLHC1Q8NHS4 586 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CDC26Q8NHZ8 85 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 FBXO27Q8NI29 283 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 NELL1Q92832 810 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 APOLD1Q96LR9 279 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 MAGEB10Q96LZ2 347 aaPredicted RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 PPP3R2Q96LZ3 170 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 AIF1LQ9BQI0 150 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 DPH7Q9BTV6 452 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 TUBB6Q9BUF5 446 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 TBC1D10AQ9BXI6 508 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 MRPL1Q9BYD6 325 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 POT1Q9NUX5 634 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 C1orf109Q9NX04 203 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 RIF1Q5UIP0 2472 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 EML5Q05BV3 1969 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 HEATR5BQ9P2D3 2071 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 UNC13CQ8NB66 2214 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 H0YHG0 523 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 H0YIV9 168 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 NR5A2O00482 541 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 GYG2O15488 501 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 PIAS2O75928 621 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 ATP5HO75947 161 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 ETHE1O95571 254 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 GBAP04062 536 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 XRCC1P18887 633 aaPredicted RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 PEBP1P30086 187 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 AVPR2P30518 371 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CASP2P42575 452 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 ARRB1P49407 418 aaPredicted RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 UFM1P61960 85 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CYP4F3Q08477 520 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 SIM2Q14190 667 aaPredicted RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 PTGR1Q14914 329 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CCDC6Q16204 474 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CACHD1Q5VU97 1274 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 RINLQ6ZS11 566 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 ZNF438Q7Z4V0 828 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 KLHDC8AQ8IYD2 350 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 ADGRF3Q8IZF5 1079 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 FBXL6Q8N531 539 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 CPSF7Q8N684 471 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 OR2L3Q8NG85 312 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 WDR20Q8TBZ3 569 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 NUDT8Q8WV74 236 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 GFM2Q969S9 779 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 REPS1Q96D71 796 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 APIPQ96GX9 242 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 MACROD1Q9BQ69 325 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 EBPLQ9BY08 206 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 OR51B5Q9H339 312 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 HRASLS2Q9NWW9 162 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 VPS29Q9UBQ0 182 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 EIF3LQ9Y262 564 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 RRP15Q9Y3B9 282 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 CCL27Q9Y4X3 112 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 SNRNP200O75643 2136 aaKnown RBP3.57□□□□□ -1.84
RTN4-208ENST00000404909 CEP192Q8TEP8 1941 aa3.57□□□□□ -1.84
RTN4-208ENST00000404909 IGKV1-8A0A0C4DH67 115 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 ANKDD1BA6NHY2 528 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 PATE3B3GLJ2 98 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 LMO7DNF2Z398 122 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 PPM1DO15297 605 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 SLC22A3O75751 556 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 LRATO95237 230 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 PRR35P0CG20 571 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 THRAP10827 490 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 MYF5P13349 255 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 HOXB3P14651 431 aaPredicted RBP3.56□□□□□ -1.84
RTN4-208ENST00000404909 AMD1P17707 334 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 CXCR2P25025 360 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 ALDH4A1P30038 563 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 CMPK1P30085 196 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 GRK3P35626 688 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 NUDT2P50583 147 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 MNAT1P51948 309 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 KCNJ2P63252 427 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 UBE2IP63279 158 aaKnown RBP3.56□□□□□ -1.84
RTN4-208ENST00000404909 CSNK1G2P78368 415 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 SLC25A3Q00325 362 aa3.56□□□□□ -1.84
RTN4-208ENST00000404909 EMX2Q04743 252 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms