RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZMAT1Q5H9K5 638 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 FAM124AQ86V42 546 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 ZSWIM9Q86XI8 627 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 TCAIMQ8N3R3 496 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 ZBTB2Q8N680 514 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 NIPSNAP1Q9BPW8 284 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 ARHGAP39Q9C0H5 1083 aa20.33■□□□□ 0.85
CTCF-202ENST00000401394 VWA8A3KMH1 1905 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 FAM227AF5H4B4 570 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 NDUFB5O43674 189 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 CLDN9O95484 217 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 CHRM5P08912 532 aaPredicted RBP20.33■□□□□ 0.84
CTCF-202ENST00000401394 RPIAP49247 311 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 ARHGDIAP52565 204 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 CLDN8P56748 225 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 NFATC2Q13469 925 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 VMACQ2NL98 169 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 LRIF1Q5T3J3 769 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 NCEH1Q6PIU2 408 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 PRSS48Q7RTY5 328 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 P3H2Q8IVL5 708 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 TRIB2Q92519 343 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 GGHQ92820 318 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 USP7Q93009 1102 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 SLC38A4Q969I6 547 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 MAGIXQ9H6Y5 334 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 SPATA7Q9P0W8 599 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 RAPGEFL1Q9UHV5 662 aa20.33■□□□□ 0.84
CTCF-202ENST00000401394 ERN1O75460 977 aaKnown RBP20.32■□□□□ 0.84
CTCF-202ENST00000401394 AZGP1P25311 298 aaKnown RBP20.32■□□□□ 0.84
CTCF-202ENST00000401394 MBTPS1Q14703 1052 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 UGT8Q16880 541 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 ZNF852Q6ZMS4 543 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 CYP4Z2PQ8N1L4 340 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 TM9SF3Q9HD45 589 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 LHX3Q9UBR4 397 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 CD84Q9UIB8 345 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 CHD5Q8TDI0 1954 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 WDR47O94967 919 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 CCNDBP1O95273 360 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 BPIP17213 487 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 FPR1P21462 350 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 CASP3P42574 277 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 ABHD18Q0P651 414 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 ZC3H12BQ5HYM0 836 aaKnown RBP20.32■□□□□ 0.84
CTCF-202ENST00000401394 GPRC6AQ5T6X5 926 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 VASH1Q7L8A9 365 aaPredicted RBP20.32■□□□□ 0.84
CTCF-202ENST00000401394 SLC5A8Q8N695 610 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 BEND7Q8N7W2 519 aaPredicted RBP20.32■□□□□ 0.84
CTCF-202ENST00000401394 OR9Q2Q8NGE9 314 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 RERGLQ9H628 205 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 REEP1Q9H902 201 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 NMRK2Q9NPI5 230 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 RHCGQ9UBD6 479 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 CRLS1Q9UJA2 301 aa20.32■□□□□ 0.84
CTCF-202ENST00000401394 SMIM30A4D0T7 59 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 H3BM21 787 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 ZNF7P17097 686 aaPredicted RBP20.31■□□□□ 0.84
CTCF-202ENST00000401394 PTCHD3Q3KNS1 767 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 UBE2J2Q8N2K1 259 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 SPPL2AQ8TCT8 520 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 KMOO15229 486 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 HMGCLP35914 325 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 ATP5C1P36542 298 aaKnown RBP20.31■□□□□ 0.84
CTCF-202ENST00000401394 CDH4P55283 916 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 KEAP1Q14145 624 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 IQCCQ4KMZ1 466 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 SERPINA13PQ6UXR4 307 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 TSPYL5Q86VY4 417 aaPredicted RBP20.31■□□□□ 0.84
CTCF-202ENST00000401394 SVOPQ8N4V2 548 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 GLB1L3Q8NCI6 653 aaPredicted RBP20.31■□□□□ 0.84
CTCF-202ENST00000401394 SAMD4AQ9UPU9 718 aaKnown RBP20.31■□□□□ 0.84
CTCF-202ENST00000401394 VPS9D1Q9Y2B5 631 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 TMEM229AB2RXF0 380 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 WNT9AO14904 365 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 PCDH7O60245 1069 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 CCR7P32248 378 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 PPP3CCP48454 512 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 WNT3P56703 355 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 DSC1Q08554 894 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 RFX4Q33E94 735 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 RSBN1Q5VWQ0 802 aaPredicted RBP20.31■□□□□ 0.84
CTCF-202ENST00000401394 APCDD1Q8J025 514 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 FUBP3Q96I24 572 aaKnown RBP eCLIP20.31■□□□□ 0.84
CTCF-202ENST00000401394 SIGLEC11Q96RL6 698 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 NDEL1Q9GZM8 345 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 ZFYVE1Q9HBF4 777 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 NEK6Q9HC98 313 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 KLHL3Q9UH77 587 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 CLEC4EQ9ULY5 219 aa20.31■□□□□ 0.84
CTCF-202ENST00000401394 TRPM7Q96QT4 1865 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 HNF1BP35680 557 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 CTSKP43235 329 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 KIR3DL1P43629 444 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 IL18R1Q13478 541 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 KCNA10Q16322 511 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 PLEKHG6Q3KR16 790 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 VANGL1Q8TAA9 524 aaPredicted RBP20.3■□□□□ 0.84
CTCF-202ENST00000401394 PIH1D2Q8WWB5 315 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 SLC22A12Q96S37 553 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms