RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 HIF1AQ16665 826 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 PRTGQ2VWP7 1150 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 HP1BP3Q5SSJ5 553 aaPredicted RBP12.79□□□□□ -0.36
VCX3A-202ENST00000398729 ADCK2Q7Z695 626 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 GALNT7Q86SF2 657 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 IGDCC3Q8IVU1 814 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 SPNS2Q8IVW8 549 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 TMEM151BQ8IW70 566 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 MYO1HQ8N1T3 1032 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 GALNT16Q8N428 558 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 DTWD1Q8N5C7 304 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 CSNK1A1LQ8N752 337 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 EFCAB3Q8N7B9 438 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 MCOLN3Q8TDD5 553 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 SSC4DQ8WTU2 575 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 EEF1AKMT1Q8WVE0 214 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 RERGQ96A58 199 aaPredicted RBP12.79□□□□□ -0.36
VCX3A-202ENST00000398729 LRRC39Q96DD0 335 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 CFAP36Q96G28 342 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 SOX17Q9H6I2 414 aaPredicted RBP12.79□□□□□ -0.36
VCX3A-202ENST00000398729 ATP13A2Q9NQ11 1180 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 CCDC177Q9NQR7 707 aaPredicted RBP12.79□□□□□ -0.36
VCX3A-202ENST00000398729 ZNF282Q9UDV7 671 aaPredicted RBP12.79□□□□□ -0.36
VCX3A-202ENST00000398729 CDC14AQ9UNH5 594 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 HEATR5BQ9P2D3 2071 aa12.79□□□□□ -0.36
VCX3A-202ENST00000398729 NUP210LQ5VU65 1888 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 VSTM2BA6NLU5 285 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 TXNDC9O14530 226 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 TTI1O43156 1089 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 PRPF4O43172 522 aaKnown RBP eCLIP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 IPO13O94829 963 aaKnown RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 SORBS2O94875 1100 aaKnown RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 MED26O95402 600 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 AHSGP02765 367 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 GABRB3P28472 473 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 ITGA8P53708 1063 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 ARL4CP56559 192 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 SOX8P57073 446 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 TIAL1Q01085 375 aaKnown RBP eCLIP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 AIMP2Q13155 320 aaKnown RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 SP140Q13342 867 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 RBBP7Q16576 425 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 RBM20Q5T481 1227 aaKnown RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 TEDDM1Q5T9Z0 273 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 HIBCHQ6NVY1 386 aaPredicted RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 JMJD6Q6NYC1 403 aaPredicted RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 PAQR3Q6TCH7 311 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 SHISA6Q6ZSJ9 500 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 LRRC56Q8IYG6 542 aaPredicted RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 RBMXL3Q8N7X1 1067 aaKnown RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 CPT1CQ8TCG5 803 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 STT3BQ8TCJ2 826 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 MVB12AQ96EY5 273 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 SNF8Q96H20 258 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 C10orf90Q96M02 699 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 CCDC138Q96M89 665 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 OR2A5Q96R48 311 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 TRIM51Q9BSJ1 452 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 PCBD2Q9H0N5 130 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 PARVBQ9HBI1 364 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 SLAMF7Q9NQ25 335 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 SEMA3GQ9NS98 782 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 STOX2Q9P2F5 926 aaPredicted RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 RNF14Q9UBS8 474 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 CORO1CQ9ULV4 474 aaPredicted RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 PYCARDQ9ULZ3 195 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 CHMP2BQ9UQN3 213 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 PDE10AQ9Y233 779 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 RUVBL1Q9Y265 456 aaKnown RBP12.78□□□□□ -0.36
VCX3A-202ENST00000398729 MAP4K5Q9Y4K4 846 aa12.78□□□□□ -0.36
VCX3A-202ENST00000398729 A1L4Q6 167 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 PABPN1LA6NDY0 278 aaKnown RBP12.77□□□□□ -0.37
VCX3A-202ENST00000398729 SOCS6O14544 535 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 SLC16A5O15375 505 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 SEC31AO94979 1220 aaKnown RBP12.77□□□□□ -0.37
VCX3A-202ENST00000398729 HIST1H2AGP0C0S8 130 aaPredicted RBP12.77□□□□□ -0.37
VCX3A-202ENST00000398729 ZGLP1P0C6A0 271 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 HIST1H2ADP20671 130 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 FBLP22087 321 aaKnown RBP12.77□□□□□ -0.37
VCX3A-202ENST00000398729 HRH2P25021 359 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 CDKN2DP55273 166 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 IL2P60568 153 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 TBPL1P62380 186 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 PDAP1Q13442 181 aaKnown RBP12.77□□□□□ -0.37
VCX3A-202ENST00000398729 HKDC1Q2TB90 917 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 IRAK1BP1Q5VVH5 260 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 GARNL3Q5VVW2 1013 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 PRAMEF13Q5VWM6 474 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 SLC6A19Q695T7 634 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 ZNF787Q6DD87 383 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 GPATCH11Q8N954 259 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 TM9SF4Q92544 642 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 PNPLA2Q96AD5 504 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 MIEF2Q96C03 454 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 LINGO1Q96FE5 620 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 HIST1H2AHQ96KK5 128 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 PWWP2AQ96N64 755 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 HIST1H2AJQ99878 128 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 H2AFJQ9BTM1 129 aa12.77□□□□□ -0.37
VCX3A-202ENST00000398729 CRB3Q9BUF7 120 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms