RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SNX2O60749 519 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 KATNA1O75449 491 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 KLHL18O94889 574 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 ST6GAL1P15907 406 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 TAC1P20366 129 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 GFERP55789 205 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 FOXK2Q01167 660 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 ASPHQ12797 758 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 CEP85LQ5SZL2 805 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 FIGLAQ6QHK4 219 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 FBXO39Q8N4B4 442 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 WDR36Q8NI36 951 aaKnown RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 ARL8AQ96BM9 186 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 MAELQ96JY0 434 aaKnown RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 SMC6Q96SB8 1091 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 HGH1Q9BTY7 390 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 PCMTD2Q9NV79 361 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 GEMIN8Q9NWZ8 242 aaKnown RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 CLCA2Q9UQC9 943 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 MUC6Q6W4X9 2439 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 TK2O00142 265 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 UBFD1O14562 309 aaKnown RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 COPEO14579 308 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 CTSVO60911 334 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 SMIM24O75264 130 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 ID4P47928 161 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 CCR8P51685 355 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 HNRNPFP52597 415 aaKnown RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 PPP1CAP62136 330 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 CSTF3Q12996 717 aaKnown RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 SPIDRQ14159 915 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 KRT71Q3SY84 523 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 CPZQ66K79 652 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 RHBDD2Q6NTF9 364 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 GALNT18Q6P9A2 607 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 OR4E2Q8NGC2 313 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 TCP10LQ8TDR4 215 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 NEIL2Q969S2 332 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 SLC46A1Q96NT5 459 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 SORT1Q99523 831 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 POLR1BQ9H9Y6 1135 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 ARL15Q9NXU5 204 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 H0YIG0 161 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 CSO75390 466 aaKnown RBP6.71□□□□□ -1.33
LIMA1-202ENST00000394943 ESRRBO95718 433 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 TOP3BO95985 862 aaKnown RBP6.71□□□□□ -1.33
LIMA1-202ENST00000394943 SERPINA6P08185 405 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 HBQ1P09105 142 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 CREB1P16220 341 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 GNAZP19086 355 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 IL10P22301 178 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 CXCR2P25025 360 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 ARRB2P32121 409 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 RPA3P35244 121 aaPredicted RBP6.71□□□□□ -1.33
LIMA1-202ENST00000394943 GMPRP36959 345 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 NOVA1P51513 510 aaKnown RBP6.71□□□□□ -1.33
LIMA1-202ENST00000394943 DAB2P98082 770 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 IFT88Q13099 833 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 GTF2H2Q13888 395 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 C16orf72Q14CZ0 275 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 CEBPEQ15744 281 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 SEPT7Q16181 437 aaKnown RBP6.71□□□□□ -1.33
LIMA1-202ENST00000394943 MRM1Q6IN84 353 aaKnown RBP6.71□□□□□ -1.33
LIMA1-202ENST00000394943 GTF2H2CQ6P1K8 395 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 SPNS2Q8IVW8 549 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 ANKRD53Q8N9V6 530 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 AGBL5Q8NDL9 886 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 UBE2E3Q969T4 207 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 C10orf90Q96M02 699 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 MAP3K3Q99759 626 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 STRADBQ9C0K7 418 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 MOSPD1Q9UJG1 213 aa6.71□□□□□ -1.33
LIMA1-202ENST00000394943 C9orf172C9J069 976 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF195O14628 629 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 CLGNO14967 610 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 ZSCAN9O15535 394 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 CPA3P15088 417 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 GRK2P25098 689 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 IGLV3-21P80748 117 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 OCRLQ01968 901 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 LCP2Q13094 533 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 RCN2Q14257 317 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 TMEM35AQ53FP2 167 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 MBOAT1Q6ZNC8 495 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 B3GNT8Q7Z7M8 397 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 DSELQ8IZU8 1212 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 ZCCHC7Q8N3Z6 543 aaKnown RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 C7orf26Q96N11 449 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 IL17FQ96PD4 163 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 NRTNQ99748 197 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 ZFYVE21Q9BQ24 234 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 WDR54Q9H977 334 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 FAM60AQ9NP50 221 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 MRPS30Q9NP92 439 aaKnown RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 SLC17A7Q9P2U7 560 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 ZFP69BQ9UJL9 534 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 WBP11Q9Y2W2 641 aaKnown RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 CFAP20Q9Y6A4 193 aaKnown RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 LAMA1P25391 3075 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms