RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 C8orf4Q9NR00 106 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 BHMG1C9JSJ3 638 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-204ENST00000367248 PIK3CBP42338 1070 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 COX10Q12887 443 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 DLG1Q12959 904 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 TTLL10Q6ZVT0 673 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 C10orf82Q8WW14 230 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 OR52B2Q96RD2 323 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 CRISPLD1Q9H336 500 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 THUMPD1Q9NXG2 353 aaKnown RBP11.26□□□□□ -0.61
SYNE1-204ENST00000367248 IGFBP5P24593 272 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 SHMT2P34897 504 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 PDX1P52945 283 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 FOLH1Q04609 750 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 KCNC3Q14003 757 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 KLHDC10Q6PID8 442 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 CLSTN3Q9BQT9 956 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 DENND2DQ9H6A0 471 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-204ENST00000367248 COL16A1Q07092 1604 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-204ENST00000367248 E7ESA3 106 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 MGRN1O60291 552 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 UGT2B11O75310 529 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 OR5F1O95221 314 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 LINGO3P0C6S8 592 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 NCK1P16333 377 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 RPP38P78345 283 aaKnown RBP11.26□□□□□ -0.61
SYNE1-204ENST00000367248 LPCAT4Q643R3 524 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 FAM156AQ8NDB6 213 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 OR51B5Q9H339 312 aa11.26□□□□□ -0.61
SYNE1-204ENST00000367248 DNAAF2Q9NVR5 837 aaKnown RBP11.26□□□□□ -0.61
SYNE1-204ENST00000367248 EEFSECP57772 596 aaKnown RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 KCTD8Q6ZWB6 473 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 GALNT5Q7Z7M9 940 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 AMER2Q8N7J2 671 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 KBTBD8Q8NFY9 601 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 FOXJ1Q92949 421 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 ZDHHC12Q96GR4 267 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 LRRC3Q9BY71 257 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 BRD7Q9NPI1 651 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 ZIM2Q9NZV7 527 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 EDIL3O43854 480 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 CASP6P55212 293 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 ACTR3P61158 418 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 OR4F3Q6IEY1 312 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 SCML4Q8N228 414 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 OR7A2PQ8NGA2 310 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 PIGXQ8TBF5 258 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 EZH1Q92800 747 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 SH3YL1Q96HL8 342 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 RANBP9Q96S59 729 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 SPRTNQ9H040 489 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 POU2F1P14859 743 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 MC1RQ01726 317 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 SNAPC1Q16533 368 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 ZSWIM7Q19AV6 140 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 PDZK1Q5T2W1 519 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 TMEM135Q86UB9 458 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 TDHQ8IZJ6 230 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 KLHDC9Q8NEP7 349 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 NLGN4YQ8NFZ3 816 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 CLEC4AQ9UMR7 237 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 TMED5Q9Y3A6 229 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 DUX1O43812 170 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 JUNP05412 331 aaKnown RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 NELFEP18615 380 aaKnown RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 RIPK1Q13546 671 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 SLC25A24Q6NUK1 477 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 NCEH1Q6PIU2 408 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 IQCHQ86VS3 1027 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 CGREF1Q99674 301 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 OSBPL7Q9BZF2 842 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 ARHGEF3Q9NR81 526 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 ING3Q9NXR8 418 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 GDE1Q9NZC3 331 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 NNATQ16517 81 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 ACSBG2Q5FVE4 666 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 PSAPL1Q6NUJ1 521 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 NUP54Q7Z3B4 507 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 GIPC3Q8TF64 312 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 HSPA12BQ96MM6 686 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 GAL3ST1Q99999 423 aa11.25□□□□□ -0.61
SYNE1-204ENST00000367248 RBM4BQ9BQ04 359 aaKnown RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 RBM4Q9BWF3 364 aaKnown RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 ZNF395Q9H8N7 513 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-204ENST00000367248 S1PR4O95977 384 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 LYSMD4Q5XG99 296 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 CBR4Q8N4T8 237 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 SMPD3Q9NY59 655 aaPredicted RBP11.24□□□□□ -0.61
SYNE1-204ENST00000367248 SIT1Q9Y3P8 196 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 TESMINQ9Y4I5 508 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 H7BY64 318 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 MAGEB3O15480 346 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 RPS9P46781 194 aaKnown RBP11.24□□□□□ -0.61
SYNE1-204ENST00000367248 CLDN2P57739 230 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 EMC10Q5UCC4 262 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 ATCAYQ86WG3 371 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 PRAP1Q96NZ9 151 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 DKKL1Q9UK85 242 aa11.24□□□□□ -0.61
SYNE1-204ENST00000367248 MAU2Q9Y6X3 613 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms