RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FAM86B2P0C5J1 330 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 VIPR2P41587 438 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SLC6A9P48067 706 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 POLR2HP52434 150 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 C1QBPQ07021 282 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 MYLK3Q32MK0 819 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 C5orf22Q49AR2 442 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 PLEKHG4Q58EX7 1191 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ARMCX4Q5H9R4 360 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SDHAF4Q5VUM1 108 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ALG1LQ6GMV1 187 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 PRMT9Q6P2P2 845 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MBOAT1Q6ZNC8 495 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 LINC00696Q6ZRV3 163 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MEPCEQ7L2J0 689 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 TRIM74Q86UV6 250 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TRIM73Q86UV7 250 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SLC41A1Q8IVJ1 513 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 FAM86B1Q8N7N1 296 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 HAVCR1Q96D42 359 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 PPP3R2Q96LZ3 170 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TCF12Q99081 682 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 RIOK2Q9BVS4 552 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 STRA6Q9BX79 667 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 RHOBTB2Q9BYZ6 727 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 GPR62Q9BZJ7 368 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CDCP1Q9H5V8 836 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 RIOX1Q9H6W3 641 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 IL1RAPQ9NPH3 570 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 BLOC1S4Q9NUP1 217 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 GPATCH2LQ9NWQ4 482 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ABCA9Q8IUA7 1624 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 AP1G1O43747 822 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 PF4P02776 101 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ITGB1P05556 798 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CD3EP07766 207 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 RCVRNP35243 200 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 STAT5AP42229 794 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SERPINB8P50452 374 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ST13P50502 369 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 MAPK12P53778 367 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 IL10RBQ08334 325 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SEZ6Q53EL9 994 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 C20orf194Q5TEA3 1177 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 NANOGP8Q6NSW7 305 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 Q6ZTK2 550 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 FAM126BQ8IXS8 530 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MIER2Q8N344 545 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CADM2Q8N3J6 435 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 AADATQ8N5Z0 425 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MAGEE2Q8TD90 523 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 GPR151Q8TDV0 419 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SLC9A6Q92581 669 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 KLHL29Q96CT2 875 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 BSCL2Q96G97 398 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 SEPSECSQ9HD40 501 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 MYNNQ9NPC7 610 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 YAE1D1Q9NRH1 226 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ZNF223Q9UK11 482 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 YARS2Q9Y2Z4 477 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 HES2Q9Y543 173 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 PCDHGA11Q9Y5H2 935 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 KIF1AQ12756 1690 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 E7ENQ6 273 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TEX46H3BTG2 121 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 FBP2O00757 339 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 EREGO14944 169 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 IDH3BO43837 385 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 FAM20BO75063 409 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 GOT2P00505 430 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 POLR2CP19387 275 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 PON1P27169 355 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 IDUAP35475 653 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 GSSP48637 474 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 MAPK11Q15759 364 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SLC35F1Q5T1Q4 408 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 RNASEH2BQ5TBB1 312 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 NT5DC1Q5TFE4 455 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TNFAIP8L2Q6P589 184 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 MEX3BQ6ZN04 569 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 SYT13Q7L8C5 426 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ATG9AQ7Z3C6 839 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TMEM139Q8IV31 216 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 BOLLQ8N9W6 283 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 OR4E2Q8NGC2 313 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 SPPL2AQ8TCT8 520 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 RLN3Q8WXF3 142 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 NACC2Q96BF6 587 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ASB9Q96DX5 294 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 CELF6Q96J87 481 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 C9orf72Q96LT7 481 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 WDR12Q9GZL7 423 aaKnown RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 MS4A7Q9GZW8 240 aaPredicted RBP3.98□□□□□ -1.77
USH2A-202ENST00000366942 CHRDQ9H2X0 955 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 KCNMB2Q9Y691 235 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 A0A1W2PRG6 482 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 ANKUB1A6NFN9 424 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 H3BN98 237 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 EBAG9O00559 213 aa3.98□□□□□ -1.77
USH2A-202ENST00000366942 TRDMT1O14717 391 aaKnown RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms