RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PRAMEF13Q5VWM6 474 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FAM72DQ6L9T8 149 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 KYAT3Q6YP21 454 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ZNF765Q7L2R6 523 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FAM72BQ86X60 149 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 EID2Q8N6I1 236 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FOLH1BQ9HBA9 442 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ACSL6Q9UKU0 697 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 TCAF1Q9Y4C2 921 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 NCANO14594 1321 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 GJA5P36382 358 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 ZNF423Q2M1K9 1284 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 REXO2Q9Y3B8 237 aaKnown RBP7.16□□□□□ -1.26
VPS13A-202ENST00000357409 CEMIPQ8WUJ3 1361 aa7.16□□□□□ -1.26
VPS13A-202ENST00000357409 FAM155AB1AL88 458 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-202ENST00000357409 RNF13O43567 381 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 PRICKLE3O43900 615 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-202ENST00000357409 ADAP00813 363 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 ZBTB48P10074 688 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-202ENST00000357409 LHCGRP22888 699 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 IL4RP24394 825 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 BLKP51451 505 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 HNRNPKP61978 463 aaKnown RBP eCLIP7.15□□□□□ -1.26
VPS13A-202ENST00000357409 LMAN2Q12907 356 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 QPRTQ15274 297 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 SLCO6A1Q86UG4 719 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 NUDT22Q9BRQ3 303 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 EBF2Q9HAK2 575 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 SYNPO2Q9UMS6 1093 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 FAM240BA0A1B0GVZ2 78 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 C6orf47O95873 294 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 CD79AP11912 226 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 ACSBG2Q5FVE4 666 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 SPDYCQ5MJ68 293 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 USP30Q70CQ3 517 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 ZFP41Q8N8Y5 198 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 GIPC3Q8TF64 312 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 BORCS8Q96FH0 119 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 CST11Q9H112 138 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 C1orf21Q9H246 121 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 XPNPEP1Q9NQW7 623 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 ING4Q9UNL4 249 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 MTMR11A4FU01 709 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 CHRNB2P17787 502 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 CCNCP24863 283 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 SOX3P41225 446 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 AFF1P51825 1210 aaKnown RBP7.15□□□□□ -1.26
VPS13A-202ENST00000357409 DSC3Q14574 896 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 POTEHQ6S545 545 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 DCDC5Q6ZRR9 648 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 ZNF784Q8NCA9 323 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-202ENST00000357409 SLC38A4Q969I6 547 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 AURKBQ96GD4 344 aaPredicted RBP7.15□□□□□ -1.26
VPS13A-202ENST00000357409 SGCZQ96LD1 299 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 DHX33Q9H6R0 707 aaKnown RBP7.15□□□□□ -1.26
VPS13A-202ENST00000357409 TMEM165Q9HC07 324 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 KCNS2Q9ULS6 477 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 PCDHB1Q9Y5F3 818 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 UBE2QL1A1L167 161 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 PDK4Q16654 411 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 SLC26A9Q7LBE3 791 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 SSX6Q7RTT6 188 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 GPRIN1Q7Z2K8 1008 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 OR51A7Q8NH64 312 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 F2RL3Q96RI0 385 aa7.15□□□□□ -1.26
VPS13A-202ENST00000357409 CLCN4P51793 760 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 CHN2P52757 468 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 CLRN1P58418 232 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 TXNDC11Q6PKC3 985 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 OR52A4PA6NMU1 304 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 ATE1O95260 518 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 OR12D1P0DN82 309 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 ACADLP28330 430 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 CDK7P50613 346 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 MTTPP55157 894 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 C4orf46Q504U0 113 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF311Q5JNZ3 666 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 RNF220Q5VTB9 566 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 TSPAN33Q86UF1 283 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 OR51L1Q8NGJ5 315 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 DIRAS2Q96HU8 199 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 INPP4AQ96PE3 977 aaPredicted RBP7.15□□□□□ -1.27
VPS13A-202ENST00000357409 APOBEC3BQ9UH17 382 aaKnown RBP7.15□□□□□ -1.27
VPS13A-202ENST00000357409 MKLN1Q9UL63 735 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 MGAT4BQ9UQ53 548 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 BPGMP07738 259 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 ITGA2P17301 1181 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 SLAMF1Q13291 335 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 RUNX3Q13761 415 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 CNEP1R1Q8N9A8 125 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 RBM15BQ8NDT2 890 aaKnown RBP7.15□□□□□ -1.27
VPS13A-202ENST00000357409 TOR1AIP2Q8NFQ8 470 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 P2RY13Q9BPV8 354 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 MFRPQ9BY79 579 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 FAM234AQ9H0X4 552 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 KCNK4Q9NYG8 393 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 EIF3KQ9UBQ5 218 aaKnown RBP7.15□□□□□ -1.27
VPS13A-202ENST00000357409 GNG8Q9UK08 70 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 GPR34Q9UPC5 381 aa7.15□□□□□ -1.27
VPS13A-202ENST00000357409 ARFIP1P53367 373 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms