RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 GPR19Q15760 415 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CPSF6Q16630 551 aaKnown RBP eCLIP3.86□□□□□ -1.79
LIG4-201ENST00000356922 HKDC1Q2TB90 917 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CCDC153Q494R4 210 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 VWA5B1Q5TIE3 1220 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ZNF425Q6IV72 752 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 GTF2H2CQ6P1K8 395 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 KLC3Q6P597 504 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 PRSS41Q7RTY9 318 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 MAVSQ7Z434 540 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 VN1R4Q7Z5H5 301 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 GLRX5Q86SX6 157 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 RAB42Q8N4Z0 105 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ZNF781Q8N8C0 355 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 OR4F6Q8NGB9 312 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 OR4K1Q8NGD4 311 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 PPP1R14CQ8TAE6 165 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ZNF483Q8TF39 744 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 SMPDL3AQ92484 453 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ZNF75CPQ92670 426 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 N4BP2L2Q92802 583 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 L3HYPDHQ96EM0 354 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 THOC1Q96FV9 657 aaKnown RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 C3orf30Q96M34 536 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CTRCQ99895 268 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 MESP1Q9BRJ9 268 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 C1QTNF3Q9BXJ4 246 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 KLHL31Q9H511 634 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SLC32A1Q9H598 525 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 RABEP2Q9H5N1 569 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 UCK1Q9HA47 277 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 PNPOQ9NVS9 261 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 WWOXQ9NZC7 414 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 NUDT4Q9NZJ9 180 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 PILRAQ9UKJ1 303 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 WASF3Q9UPY6 502 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 TMEM184BQ9Y519 407 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 CCDC88CQ9P219 2028 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 USP24Q9UPU5 2620 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 TEX51A0A1B0GUA7 166 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 K7EPI3 171 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 POLR3GO15318 223 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 MAP3K7O43318 606 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 TRIM13O60858 407 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 S100BP04271 92 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 EBLN1P0CF75 366 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 THRAP10827 490 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 TAC1P20366 129 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SHMT2P34897 504 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 BCL6P41182 706 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SEC24CP53992 1094 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CYP4F3Q08477 520 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 TARDBPQ13148 414 aaKnown RBP eCLIP3.86□□□□□ -1.79
LIG4-201ENST00000356922 CHIT1Q13231 466 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SQSTM1Q13501 440 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 INAVAQ3KP66 663 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 PRAMEF13Q5VWM6 474 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CDCP2Q5VXM1 449 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 LIPMQ5VYY2 423 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CGB2Q6NT52 195 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 TMEM71Q6P5X7 295 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 FRMD7Q6ZUT3 714 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 MYLK4Q86YV6 388 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 NUDCD3Q8IVD9 361 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 KCT2Q8NC54 265 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ZFPM2Q8WW38 1151 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 UCN3Q969E3 161 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 PPP1R36Q96LQ0 422 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CCDC74BQ96LY2 380 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 OR2A5Q96R48 311 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SORBS1Q9BX66 1292 aaKnown RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 TRIM54Q9BYV2 358 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SPRTNQ9H040 489 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 CCDC177Q9NQR7 707 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 SENP1Q9P0U3 644 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 MARCOQ9UEW3 520 aaPredicted RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 LNPEPQ9UIQ6 1025 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ENTPD2Q9Y5L3 495 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 HEBP2Q9Y5Z4 205 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ADAMTS20P59510 1910 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 A0A0J9YVX5 310 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 OR2W5A6NFC9 320 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SAP18O00422 153 aaKnown RBP3.86□□□□□ -1.79
LIG4-201ENST00000356922 TM9SF1O15321 606 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ZW10O43264 779 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 RASSF9O75901 435 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 PNLIPP16233 465 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ZNF28P17035 718 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 NDUFS1P28331 727 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 HNF4AP41235 474 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 HNMTP50135 292 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 SLC18A1P54219 525 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 E2F2Q14209 437 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ARHGAP19Q14CB8 494 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 ABRAXAS2Q15018 415 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 PDK4Q16654 411 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 HES3Q5TGS1 186 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 CACHD1Q5VU97 1274 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 LCN10Q6JVE6 187 aa3.86□□□□□ -1.79
LIG4-201ENST00000356922 FOXR1Q6PIV2 292 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms