RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 ZYG11AQ6WRX3 759 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 CDHR3Q6ZTQ4 885 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 DPPA4Q7L190 304 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 ZNF771Q7L3S4 317 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 RAB11FIP2Q7L804 512 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 PIWIL4Q7Z3Z4 852 aaKnown RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SPATA21Q7Z572 469 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 PARGQ86W56 976 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 CAMK1DQ8IU85 385 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SLC22A9Q8IVM8 553 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 DENND6AQ8IWF6 608 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 LRRC34Q8IZ02 419 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 NRSN1Q8IZ57 195 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 CENPLQ8N0S6 344 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 RBFAQ8N0V3 343 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 FBXO39Q8N4B4 442 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 ARHGEF39Q8N4T4 335 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 OTUD6BQ8N6M0 293 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 OR13C4Q8NGS5 318 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 MGARPQ8TDB4 240 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 PDCD6IPQ8WUM4 868 aaKnown RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 KLHL6Q8WZ60 621 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 OR8D1Q8WZ84 308 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 ZNF75CPQ92670 426 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 NAT6Q93015 286 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 PDLIM5Q96HC4 596 aaKnown RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 NSMCE3Q96MG7 304 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 CCDC3Q9BQI4 270 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 AARSD1Q9BTE6 412 aaKnown RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SYNDIG1Q9H7V2 258 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 FZD3Q9NPG1 666 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 FGFR1OP2Q9NVK5 253 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SLC17A7Q9P2U7 560 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 CGGBP1Q9UFW8 167 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 IL36AQ9UHA7 158 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SLCO3A1Q9UIG8 710 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SARDHQ9UL12 918 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 EMCNQ9ULC0 261 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SLC39A10Q9ULF5 831 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 ARL2BPQ9Y2Y0 163 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 MTO1Q9Y2Z2 717 aaKnown RBP6.78□□□□□ -1.32
VPS13A-201ENST00000355766 CSNK1G3Q9Y6M4 447 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SLC30A1Q9Y6M5 507 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 ABCA12Q86UK0 2595 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 ANKRD36A6QL64 1941 aa6.78□□□□□ -1.32
VPS13A-201ENST00000355766 SCN8AQ9UQD0 1980 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 IGLV3-16A0A075B6K0 115 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 GLYATL1P3A0A0U1RQE8 302 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 A0A1W2PQU0 124 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 SYCE1LA8MT33 242 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 TARM1B6A8C7 271 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 D6RAR5 112 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 C1QTNF3-AMACRE9PGA6 284 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 SLCO1B7G3V0H7 640 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 NVLO15381 856 aaKnown RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 AQP9O43315 295 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 HNRNPCL1O60812 293 aaKnown RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 VPS26AO75436 327 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 NDUFS3O75489 264 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 PPM1BO75688 479 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 DCTN3O75935 186 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 SRP72O76094 671 aaKnown RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 HGFP14210 728 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 CPA3P15088 417 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 ALOX15P16050 662 aaPredicted RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 MC4RP32245 332 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 MAPK9P45984 424 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 SEPHS1P49903 392 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 CLDN2P57739 230 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 TAS2R39P59534 338 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 CTBP1Q13363 440 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 FZD2Q14332 565 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 PCLAFQ15004 111 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 ZNF284Q2VY69 593 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 SPATS1Q496A3 300 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 CDKL4Q5MAI5 379 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 PIP5KL1Q5T9C9 394 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 HECTD2Q5U5R9 776 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 FAM91A1Q658Y4 838 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 TTC19Q6DKK2 380 aaPredicted RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 NEK5Q6P3R8 708 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 TTC23LQ6PF05 361 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 BORAQ6PGQ7 559 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 MACC1Q6ZN28 852 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 RAPH1Q70E73 1250 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 KDELC2Q7Z4H8 507 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 PTAR1Q7Z6K3 402 aaPredicted RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 CMC1Q7Z7K0 106 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 HORMAD1Q86X24 394 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 DCP2Q8IU60 420 aaKnown RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 NUDCD3Q8IVD9 361 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 SLC35F3Q8IY50 421 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 RYBPQ8N488 228 aaPredicted RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 NKAPQ8N5F7 415 aaKnown RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 GPATCH11Q8N954 259 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 C19orf47Q8N9M1 422 aaKnown RBP6.77□□□□□ -1.33
VPS13A-201ENST00000355766 GDAP1Q8TB36 358 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 PPP4R1Q8TF05 950 aa6.77□□□□□ -1.33
VPS13A-201ENST00000355766 KLK6Q92876 244 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms