RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 A0A0A0MRY4 1105 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 TK2O00142 265 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 DNAJB6O75190 326 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 ETS1P14921 441 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 OR2B6P58173 313 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 MLF1P58340 268 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 KIAA1614Q5VZ46 1190 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 KLHDC10Q6PID8 442 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 MBOAT1Q6ZNC8 495 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 IL17RCQ8NAC3 791 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 ABHD11Q8NFV4 315 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 TSPAN14Q8NG11 270 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 RBP7Q96R05 134 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 YAE1D1Q9NRH1 226 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 PARPBPQ9NWS1 579 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 ADA2Q9NZK5 511 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 CYTH4Q9UIA0 394 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 ERGIC3Q9Y282 383 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 NWD2Q9ULI1 1742 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 FOXE1O00358 373 aaPredicted RBP8.15□□□□□ -1.11
HMGB1-203ENST00000341423 STK16O75716 305 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 BAG2O95816 211 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 F10P00742 488 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 ETV3P41162 512 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 GRIA3P42263 894 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 HSPA13P48723 471 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 KRR1Q13601 381 aaKnown RBP8.15□□□□□ -1.11
HMGB1-203ENST00000341423 TAF1AQ15573 450 aaPredicted RBP8.15□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM119Q4V9L6 283 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 APTXQ7Z2E3 356 aaKnown RBP8.15□□□□□ -1.11
HMGB1-203ENST00000341423 BMP8AQ7Z5Y6 402 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 OR4C15Q8NGM1 316 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 GCDHQ92947 438 aaPredicted RBP8.15□□□□□ -1.11
HMGB1-203ENST00000341423 CCDC74BQ96LY2 380 aa8.15□□□□□ -1.11
HMGB1-203ENST00000341423 POLDIP3Q9BY77 421 aaKnown RBP8.15□□□□□ -1.11
HMGB1-203ENST00000341423 COL2A1P02458 1487 aaPredicted RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 IQCMA0A1B0GVH7 501 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 VSTM2BA6NLU5 285 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 PSMD11O00231 422 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 CYB5BO43169 146 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 UNC5CO95185 931 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 CD70P32970 193 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 EFNA3P52797 238 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 SLC3A1Q07837 685 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 KCNAB2Q13303 367 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 KIR2DS3Q14952 304 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 WHAMMP3Q1A5X7 153 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 KLHL22Q53GT1 634 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 GJB7Q6PEY0 223 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 C12orf54Q6X4T0 127 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 IFNEQ86WN2 208 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 MCATQ8IVS2 390 aaKnown RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 MCOLN2Q8IZK6 566 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 SEC61A2Q9H9S3 476 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 RAB9BQ9NP90 201 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 DDX28Q9NUL7 540 aaKnown RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 ARHGAP20Q9P2F6 1191 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 BDP1A6H8Y1 2624 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 DPPA5A6NC42 116 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 PRR19A6NJB7 356 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 MATN3O15232 486 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 ADRB2P07550 413 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 RBL1P28749 1068 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 APLNRP35414 380 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 FOLH1Q04609 750 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 SPANXN3Q5MJ09 141 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 ZFAND4Q86XD8 727 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 ANKFN1Q8N957 763 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 NDNFQ8TB73 568 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 LRRC39Q96DD0 335 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 DESI2Q9BSY9 194 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 HCSTQ9UBK5 93 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 LRRC30A6NM36 301 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 HOXC11O43248 304 aaPredicted RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 IFNGP01579 166 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 CCDC159P0C7I6 412 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 NUDT6P53370 316 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 PTGES3Q15185 160 aaKnown RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 IRF4Q15306 451 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 OASLQ15646 514 aaKnown RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 SLC9B1Q4ZJI4 515 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 YOD1Q5VVQ6 348 aaPredicted RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM53Q6P2H8 277 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 KATNAL2Q8IYT4 538 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 ACTL9Q8TC94 416 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 BARX1Q9HBU1 254 aaPredicted RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM184CQ9NVA4 438 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 LYARQ9NX58 379 aaKnown RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 IMPAD1Q9NX62 359 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 ACTR10Q9NZ32 417 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 KLHL20Q9Y2M5 609 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 CSNK1G3Q9Y6M4 447 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 CHD4Q14839 1912 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 TRBV11-1A0A0K0K1C0 115 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 C5orf67F2Z3F1 127 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 M0QZQ0 153 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 TNFRSF10CO14798 259 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 SRPX2O60687 465 aaPredicted RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 SEC31AO94979 1220 aaKnown RBP8.14□□□□□ -1.11
HMGB1-203ENST00000341423 ESR1P03372 595 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms