RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 BHLHE22Q8NFJ8 381 aaPredicted RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 OR2T12Q8NG77 320 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 RHEBL1Q8TAI7 183 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 RCN3Q96D15 328 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 LRRC46Q96FV0 321 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 CAMK1GQ96NX5 476 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 DEPDC7Q96QD5 511 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 NECTIN3Q9NQS3 549 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ACSS2Q9NR19 701 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 KLRF1Q9NZS2 232 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 SNX3O60493 162 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 CNOT3O75175 753 aaKnown RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 SASH3O75995 380 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 IFNGP01579 166 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 CD1DP15813 335 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 LGALS3BPQ08380 585 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 C1DQ13901 141 aaKnown RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 KIR2DS3Q14952 304 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ADAMTSL4Q6UY14 1074 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 RANBP10Q6VN20 620 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ZDHHC13Q8IUH4 622 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 TEX47Q8TBZ9 253 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 MIEF2Q96C03 454 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 EPB41L4BQ9H329 900 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 WDR55Q9H6Y2 383 aaPredicted RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 TAAR2Q9P1P5 351 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 PRODH2Q9UF12 536 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 PRPF19Q9UMS4 504 aaKnown RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 SLC6A14Q9UN76 642 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 FAM234BA2RU67 622 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 SAC3D1A6NKF1 404 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ANKRD65E5RJM6 399 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 SLC22A2O15244 555 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 REM1O75628 298 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 STATHP02808 62 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 PDHA1P08559 390 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ADSLP30566 484 aaPredicted RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 FOLR3P41439 243 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 TPMTP51580 245 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 CRISP3P54108 245 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 RAB8AP61006 207 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 LEXMQ3ZCV2 418 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 NXPE4Q6UWF7 544 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 FAM220AQ7Z4H9 259 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 C11orf65Q8NCR3 313 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 KLHL4Q9C0H6 718 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 METTL7AQ9H8H3 244 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 IL17CQ9P0M4 197 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 SPO11Q9Y5K1 396 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 MTCH2Q9Y6C9 303 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 SCDO00767 359 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 RSL1D1O76021 490 aaKnown RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 KLKB1P03952 638 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 CCR5P51681 352 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 SNTA1Q13424 505 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 IQCKQ8N0W5 287 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 METTL27Q8N6F8 245 aaPredicted RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 MDGA1Q8NFP4 955 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 OR4K17Q8NGC6 315 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ACTR10Q9NZ32 417 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 DKKL1Q9UK85 242 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 A8MUI8 341 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 CLCN7P51798 805 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 OR4D2P58180 307 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 OR6Y1Q8NGX8 325 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 FGF14Q92915 247 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 DPH7Q9BTV6 452 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 OSBPL7Q9BZF2 842 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 LRIT1Q9P2V4 623 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 MUTYHQ9UIF7 546 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 SPIN1Q9Y657 262 aaPredicted RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 LTBP1Q14766 1721 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 TP53I11O14683 189 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 HSD3B1P14060 373 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 CD247P20963 164 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 HSD3B2P26439 372 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 GSTM2P28161 218 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 RGS8P57771 180 aaPredicted RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 CDC42P60953 191 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 REP15Q6BDI9 236 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 LRRC74BQ6ZQY2 392 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 TMEM135Q86UB9 458 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 JAZF1Q86VZ6 243 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 ARL14Q8N4G2 192 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 GPR26Q8NDV2 337 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 PNPT1Q8TCS8 783 aaKnown RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 NT5C3BQ969T7 300 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 RIBC2Q9H4K1 309 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 ADAP2Q9NPF8 381 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 IL26Q9NPH9 171 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 POT1Q9NUX5 634 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 RNF11Q9Y3C5 154 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 LOC285095A0A1B0GVY8 99 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 IGHEP01854 428 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 RNH1P13489 461 aaKnown RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 ITGB8P26012 769 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 RPL34P49207 117 aaKnown RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 CSNK1EP49674 416 aaKnown RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 POMZP3Q6PJE2 187 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 PRR11Q96HE9 360 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms