RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TRPC4APQ8TEL6 797 aa21.28■■□□□ 1
SDC3-202ENST00000339394 SREK1Q8WXA9 508 aaKnown RBP21.28■■□□□ 1
SDC3-202ENST00000339394 STRADBQ9C0K7 418 aa21.28■■□□□ 1
SDC3-202ENST00000339394 CHRNA10Q9GZZ6 450 aa21.28■■□□□ 1
SDC3-202ENST00000339394 GSTO2Q9H4Y5 243 aa21.28■■□□□ 1
SDC3-202ENST00000339394 ANKMY1Q9P2S6 941 aa21.28■■□□□ 1
SDC3-202ENST00000339394 FAM149AA5PLN7 773 aa21.27■■□□□ 1
SDC3-202ENST00000339394 MAP3K7O43318 606 aa21.27■■□□□ 1
SDC3-202ENST00000339394 CTSVO60911 334 aa21.27■■□□□ 1
SDC3-202ENST00000339394 WFS1O76024 890 aa21.27■■□□□ 1
SDC3-202ENST00000339394 C1GALT1C1LP0DN25 315 aa21.27■■□□□ 1
SDC3-202ENST00000339394 FGF3P11487 239 aaPredicted RBP21.27■■□□□ 1
SDC3-202ENST00000339394 MEF2AQ02078 507 aaPredicted RBP21.27■■□□□ 1
SDC3-202ENST00000339394 IRF8Q02556 426 aa21.27■■□□□ 1
SDC3-202ENST00000339394 CHIT1Q13231 466 aa21.27■■□□□ 1
SDC3-202ENST00000339394 KCNAB1Q14722 419 aa21.27■■□□□ 1
SDC3-202ENST00000339394 XKR6Q5GH73 641 aa21.27■■□□□ 1
SDC3-202ENST00000339394 ATG9BQ674R7 924 aa21.27■■□□□ 1
SDC3-202ENST00000339394 ZCCHC23Q6ZST2 131 aa21.27■■□□□ 1
SDC3-202ENST00000339394 FAM129CQ86XR2 697 aa21.27■■□□□ 1
SDC3-202ENST00000339394 AGBL5Q8NDL9 886 aa21.27■■□□□ 1
SDC3-202ENST00000339394 ATP6V1E2Q96A05 226 aa21.27■■□□□ 1
SDC3-202ENST00000339394 GRAMD1AQ96CP6 724 aa21.27■■□□□ 1
SDC3-202ENST00000339394 CMKLR1Q99788 373 aa21.27■■□□□ 1
SDC3-202ENST00000339394 EHD1Q9H4M9 534 aa21.27■■□□□ 1
SDC3-202ENST00000339394 PELI2Q9HAT8 420 aa21.27■■□□□ 1
SDC3-202ENST00000339394 HAT1O14929 419 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 MLLT3P42568 568 aaPredicted RBP21.27■□□□□ 0.99
SDC3-202ENST00000339394 CASP2P42575 452 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 CCNG1P51959 295 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 NAA20P61599 178 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 SH3BP2P78314 561 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 DOC2AQ14183 400 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 FBXO42Q6P3S6 717 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 FRMD7Q6ZUT3 714 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 TMPRSS7Q7RTY8 843 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 PLD3Q8IV08 490 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 GALNT15Q8N3T1 639 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 OR6Y1Q8NGX8 325 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 WDR34Q96EX3 536 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 FCRL4Q96PJ5 515 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 CDK15Q96Q40 435 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 SPNS1Q9H2V7 528 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 ACTR8Q9H981 624 aa21.27■□□□□ 0.99
SDC3-202ENST00000339394 A0A1B0GTL3 188 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 FEZF1A0PJY2 475 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 HCRTR1O43613 425 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 MLYCDO95822 493 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 EBLN1P0CF75 366 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 FOLR1P15328 257 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 CHN1P15882 459 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 CD22P20273 847 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 LCP2Q13094 533 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 E2F2Q14209 437 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 CHI3L2Q15782 390 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 TBCCQ15814 346 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 RBBP7Q16576 425 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 TMTC4Q5T4D3 741 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 MARCH9Q86YJ5 346 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 DNAJC22Q8N4W6 341 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 ZNF740Q8NDX6 193 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 PTCD3Q96EY7 689 aaKnown RBP21.26■□□□□ 0.99
SDC3-202ENST00000339394 LIN37Q96GY3 246 aaPredicted RBP21.26■□□□□ 0.99
SDC3-202ENST00000339394 NTMT1Q9BV86 223 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 GEMIN8Q9NWZ8 242 aaKnown RBP21.26■□□□□ 0.99
SDC3-202ENST00000339394 OCIAD1Q9NX40 245 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 PILRAQ9UKJ1 303 aa21.26■□□□□ 0.99
SDC3-202ENST00000339394 COL27A1Q8IZC6 1860 aaPredicted RBP21.25■□□□□ 0.99
SDC3-202ENST00000339394 EZRP15311 586 aaKnown RBP21.25■□□□□ 0.99
SDC3-202ENST00000339394 GRK3P35626 688 aa21.25■□□□□ 0.99
SDC3-202ENST00000339394 CCR10P46092 362 aa21.25■□□□□ 0.99
SDC3-202ENST00000339394 RELAQ04206 551 aa21.25■□□□□ 0.99
SDC3-202ENST00000339394 RAB11FIP2Q7L804 512 aa21.25■□□□□ 0.99
SDC3-202ENST00000339394 PPP1R14CQ8TAE6 165 aa21.25■□□□□ 0.99
SDC3-202ENST00000339394 CNDP1Q96KN2 507 aa21.25■□□□□ 0.99
SDC3-202ENST00000339394 AIF1LQ9BQI0 150 aa21.25■□□□□ 0.99
SDC3-202ENST00000339394 AKAP7Q9P0M2 348 aaPredicted RBP21.25■□□□□ 0.99
SDC3-202ENST00000339394 ZNF225Q9UK10 706 aa21.25■□□□□ 0.99
SDC3-202ENST00000339394 A0A0J9YVX5 310 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 EFCAB7A8K855 629 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 UBFD1O14562 309 aaKnown RBP21.24■□□□□ 0.99
SDC3-202ENST00000339394 LCMT2O60294 686 aaKnown RBP21.24■□□□□ 0.99
SDC3-202ENST00000339394 UGDHO60701 494 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 H2AFYO75367 372 aaKnown RBP21.24■□□□□ 0.99
SDC3-202ENST00000339394 CLDN9O95484 217 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 OTCP00480 354 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 NEFHP12036 1026 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 ARL1P40616 181 aaPredicted RBP21.24■□□□□ 0.99
SDC3-202ENST00000339394 TRAF3Q13114 568 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 SLBPQ14493 270 aaKnown RBP eCLIP21.24■□□□□ 0.99
SDC3-202ENST00000339394 DEFB110Q30KQ9 67 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 LIPJQ5W064 366 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 CES4AQ5XG92 561 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 RNF44Q7L0R7 432 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 MILR1Q7Z6M3 343 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 MYLK4Q86YV6 388 aaPredicted RBP21.24■□□□□ 0.99
SDC3-202ENST00000339394 ZNF382Q96SR6 550 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 ZFYVE21Q9BQ24 234 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 EFCAB11Q9BUY7 163 aa21.24■□□□□ 0.99
SDC3-202ENST00000339394 SARGQ9BW04 601 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms