RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SOWAHBA6NEL2 793 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 M0R036 132 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 HSPA12AO43301 675 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 DIRAS1O95057 198 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 RPL6Q02878 288 aaKnown RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 TIGD6Q17RP2 521 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 IQCCQ4KMZ1 466 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 SYPL2Q5VXT5 272 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 THAP3Q8WTV1 239 aaPredicted RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 BORCS8Q96FH0 119 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 ERMAPQ96PL5 475 aaPredicted RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 TMEM168Q9H0V1 697 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 APOBEC3GQ9HC16 384 aaKnown RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 IFT52Q9Y366 437 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 PPRC1Q5VV67 1664 aaKnown RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 K7EPI3 171 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 HLA-DQB2P05538 268 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 SEMA3AQ14563 771 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 TTLL10Q6ZVT0 673 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 KCTD9Q7L273 389 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 OR8S1Q8NH09 359 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 OR8K3Q8NH51 312 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 SDHAF3Q9NRP4 125 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 RIMS1Q86UR5 1692 aaKnown RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 NRIP1P48552 1158 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 NUDT6P53370 316 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 DSTNP60981 165 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 FKBP1BP68106 108 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 KLHL22Q53GT1 634 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 ALG10Q5BKT4 473 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 SPRYD7Q5W111 196 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 TMEM198Q66K66 360 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 SVOPLQ8N434 492 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 MINDY2Q8NBR6 621 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 RGMAQ96B86 450 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 EBF3Q9H4W6 596 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 RC3H2Q9HBD1 1191 aaKnown RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 RHCGQ9UBD6 479 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 PEX12O00623 359 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 CLDN7O95471 211 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 MBOAT1Q6ZNC8 495 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 MARCH9Q86YJ5 346 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 TMEM126BQ8IUX1 230 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 FITM2Q8N6M3 262 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 BOLLQ8N9W6 283 aaKnown RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 INPP4AQ96PE3 977 aaPredicted RBP12.31□□□□□ -0.44
SDC3-201ENST00000336798 EBF4Q9BQW3 602 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 GSKIPQ9P0R6 139 aa12.31□□□□□ -0.44
SDC3-201ENST00000336798 AURKAO14965 403 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 AOC2O75106 756 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 SOX14O95416 240 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 VAMP1P23763 118 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 APLP1P51693 650 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 DGKQP52824 942 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 RAB39AQ14964 217 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 CARD17Q5XLA6 110 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 RPS27LQ71UM5 84 aaKnown RBP12.3□□□□□ -0.44
SDC3-201ENST00000336798 NUDT13Q86X67 352 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 C1orf52Q8N6N3 182 aaKnown RBP12.3□□□□□ -0.44
SDC3-201ENST00000336798 CNTD1Q8N815 330 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ZNF565Q8N9K5 539 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 OR52E4Q8NGH9 312 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 CXorf21Q9HAI6 301 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 PCDHGA10Q9Y5H3 936 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 FXYD6-FXYD2A0A087WZ82 144 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ZNF99A8MXY4 864 aaPredicted RBP12.3□□□□□ -0.44
SDC3-201ENST00000336798 HAS3O00219 553 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ZNF12P17014 697 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 SYT16Q17RD7 645 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 SH3D19Q5HYK7 790 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ANO7Q6IWH7 933 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 SUSD1Q6UWL2 747 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 DNAAF1Q8NEP3 725 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 OR6N1Q8NGY5 312 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 RFT1Q96AA3 541 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 FXYD6Q9H0Q3 95 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 C11orf49Q9H6J7 331 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ENY2Q9NPA8 101 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 CNTN3Q9P232 1028 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 CYTH4Q9UIA0 394 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 YARS2Q9Y2Z4 477 aaKnown RBP12.3□□□□□ -0.44
SDC3-201ENST00000336798 J3KR12 359 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ORC5O43913 435 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 KAT7O95251 611 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ENTPD1P49961 510 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 OLIG2Q13516 323 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 SLC25A25Q6KCM7 469 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 INO80EQ8NBZ0 244 aaPredicted RBP12.3□□□□□ -0.44
SDC3-201ENST00000336798 BEX2Q9BXY8 128 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 BEX1Q9HBH7 125 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 TREM1Q9NP99 234 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 EDARQ9UNE0 448 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 SALL3Q9BXA9 1300 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 DEPDC5O75140 1603 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 KANTRA0A1W2PQU2 76 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ATF6P18850 670 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 ACVRL1P37023 503 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 GDF5P43026 501 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 SIRPB2Q5JXA9 342 aa12.3□□□□□ -0.44
SDC3-201ENST00000336798 GRASPQ7Z6J2 395 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms