RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 ACSL6Q9UKU0 697 aa12.5□□□□□ -0.41
HMGCS1-201ENST00000325110 FAM32AQ9Y421 112 aaKnown RBP12.5□□□□□ -0.41
HMGCS1-201ENST00000325110 MAP4K5Q9Y4K4 846 aa12.5□□□□□ -0.41
HMGCS1-201ENST00000325110 A0A1W2PRU2 124 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 FPR1P21462 350 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CHI3L1P36222 383 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CD97P48960 835 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 SP3Q02447 781 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 TP53BP2Q13625 1128 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 KIAA0040Q15053 153 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 NIPAL1Q6NVV3 410 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 RBM12BQ8IXT5 1001 aaKnown RBP12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 FAM9CQ8IZT9 166 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 OR4A15Q8NGL6 344 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CD99L2Q8TCZ2 262 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 LGALS12Q96DT0 336 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 KLF16Q9BXK1 252 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 MTG2Q9H4K7 406 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 ZNF556Q9HAH1 456 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 VPS29Q9UBQ0 182 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 TMEFF2Q9UIK5 374 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 KNL1Q8NG31 2342 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 A8MU76 341 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 NEDD8-MDP1E9PL57 170 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 TNFRSF11BO00300 401 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 INPPL1O15357 1258 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 HOXA2O43364 376 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CCDC159P0C7I6 412 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 BDKRB1P46663 353 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CLK3P49761 638 aaKnown RBP12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 MEF2AQ02078 507 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CAMK2GQ13555 558 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 DUOXA1Q1HG43 343 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 UAP1L1Q3KQV9 507 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 PLEKHG6Q3KR16 790 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 GPR33Q49SQ1 333 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 DPY19L3Q6ZPD9 716 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CCDC103Q8IW40 242 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 TCF25Q9BQ70 676 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 NTMT1Q9BV86 223 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 SLC29A3Q9BZD2 475 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 SUV39H2Q9H5I1 410 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 RHCGQ9UBD6 479 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 FBXO10Q9UK96 956 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CCL27Q9Y4X3 112 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 PCDHGA10Q9Y5H3 936 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 GRXCR2A6NFK2 248 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 WNT9AO14904 365 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 SLC22A1O15245 554 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 PRPS1L1P21108 318 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 KRT20P35900 424 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 MED22Q15528 200 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 IER5LQ5T953 404 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 KIAA1614Q5VZ46 1190 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 GTF2IRD2BQ6EKJ0 949 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 DSG4Q86SJ6 1040 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 GTF2IRD2Q86UP8 949 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CHPT1Q8WUD6 406 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CORO1BQ9BR76 489 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 ZBTB20Q9HC78 741 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 RAB23Q9ULC3 237 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 AP3M1Q9Y2T2 418 aa12.49□□□□□ -0.41
HMGCS1-201ENST00000325110 CHRM5P08912 532 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 JUNBP17275 347 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 ITIH1P19827 911 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 LYPLAL1Q5VWZ2 237 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 SHQ1Q6PI26 577 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.48□□□□□ -0.411e-9■■■■□ 19.7
HMGCS1-201ENST00000325110 SLC16A12Q6ZSM3 486 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 TPRG1Q6ZUI0 275 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 TRIM46Q7Z4K8 759 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 CACUL1Q86Y37 369 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 LILRA3Q8N6C8 439 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 CHST14Q8NCH0 376 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 CSGALNACT1Q8TDX6 532 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 PPP1R14BQ96C90 147 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 TTLL2Q9BWV7 592 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 TM9SF3Q9HD45 589 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 E7EQ34 232 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 GAPDHSO14556 408 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 ZNF197O14709 1029 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 KPNA5O15131 536 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 BMP4P12644 408 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 ALDH9A1P49189 494 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 RPS3AP61247 264 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 COL9A2Q14055 689 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 SOWAHCQ53LP3 525 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 ZNF605Q86T29 641 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 C2orf15Q8WU43 125 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 S100ZQ8WXG8 99 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 SORCS1Q8WY21 1168 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 CMTM7Q96FZ5 175 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 TSEN34Q9BSV6 310 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 TRIT1Q9H3H1 467 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 KIAA1522Q9P206 1035 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 LRG1P02750 347 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 GTF2E2P29084 291 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 GABARAPL2P60520 117 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 NPRL3Q12980 569 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 ST13P5Q8NFI4 369 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms