RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MAP10Q9P2G4 905 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 ITM2BQ9Y287 266 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 PKD1L3Q7Z443 1732 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 IRS2Q9Y4H2 1338 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 ANKRD12Q6UB98 2062 aa18.79■□□□□ 0.6
USP48-201ENST00000308271 FYNP06241 537 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 RGS8P57771 180 aaPredicted RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 SLC24A5Q71RS6 500 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 CLEC14AQ86T13 490 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 ZNF655Q8N720 491 aaPredicted RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 SLC37A3Q8NCC5 494 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 EXOSC8Q96B26 276 aaKnown RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 GMLQ99445 158 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 RACGAP1Q9H0H5 632 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 MTMR10Q9NXD2 777 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 PAQR5Q9NXK6 330 aaPredicted RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 MYO18AQ92614 2054 aaKnown RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 AKAP8O43823 692 aaKnown RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 ELFN1P0C7U0 828 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 DCTP40126 519 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 CDK5R2Q13319 367 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 PAGE3Q5JUK9 113 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 ATXN7L2Q5T6C5 722 aaPredicted RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 LYSMD3Q7Z3D4 306 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 RGL4Q8IZJ4 473 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 MGLLQ99685 303 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 MS4A12Q9NXJ0 267 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 AASSQ9UDR5 926 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 HEMK1Q9Y5R4 338 aaPredicted RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 STON1Q9Y6Q2 735 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 OR2AG2A6NM03 316 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 UPK1BO75841 260 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 H1F0P07305 194 aaKnown RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 OMPP47874 163 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 SPIN4Q56A73 249 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 SLC43A3Q8NBI5 491 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 WDR83Q9BRX9 315 aaKnown RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 ZDHHC3Q9NYG2 299 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 EIF3KQ9UBQ5 218 aaKnown RBP18.78■□□□□ 0.6
USP48-201ENST00000308271 SCML2Q9UQR0 700 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 CSF2P04141 144 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 RLN1P04808 185 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 ARSDP51689 593 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 C14orf80Q86SX3 495 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 ADAMTS15Q8TE58 950 aa18.78■□□□□ 0.6
USP48-201ENST00000308271 B4GAT1O43505 415 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 PRMT3O60678 531 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 PFKMP08237 780 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 IL7P13232 177 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 RPL4P36578 427 aaKnown RBP18.77■□□□□ 0.6
USP48-201ENST00000308271 DSTNP60981 165 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 PITPNAQ00169 270 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 FAM110CQ1W6H9 321 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 ZNF630Q2M218 657 aaPredicted RBP18.77■□□□□ 0.6
USP48-201ENST00000308271 ANKDD1AQ495B1 522 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 MPPE1Q53F39 396 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 C1orf52Q8N6N3 182 aaKnown RBP18.77■□□□□ 0.6
USP48-201ENST00000308271 ZNF486Q96H40 463 aaPredicted RBP18.77■□□□□ 0.6
USP48-201ENST00000308271 ALPK1Q96QP1 1244 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 CYP2S1Q96SQ9 504 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 SMURF1Q9HCE7 757 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 ZNF780BQ9Y6R6 833 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 HLA-DPB1P04440 258 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 RETP07949 1114 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 CRHBPP24387 322 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 RPL10P27635 214 aaKnown RBP18.77■□□□□ 0.6
USP48-201ENST00000308271 NKX2-5P52952 324 aaPredicted RBP18.77■□□□□ 0.6
USP48-201ENST00000308271 RCAN2Q14206 197 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 SHQ1Q6PI26 577 aaKnown RBP18.77■□□□□ 0.6
USP48-201ENST00000308271 MARCH9Q86YJ5 346 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 NPAS3Q8IXF0 933 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 ZFP90Q8TF47 636 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 PPP1R16AQ96I34 528 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 C12orf4Q9NQ89 552 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 RIMKLBQ9ULI2 386 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 SLC22A14Q9Y267 594 aa18.77■□□□□ 0.6
USP48-201ENST00000308271 JUNP05412 331 aaKnown RBP18.77■□□□□ 0.59
USP48-201ENST00000308271 CASP9P55211 416 aa18.77■□□□□ 0.59
USP48-201ENST00000308271 TNFAIP8L2Q6P589 184 aaPredicted RBP18.77■□□□□ 0.59
USP48-201ENST00000308271 BEND5Q7L4P6 421 aa18.77■□□□□ 0.59
USP48-201ENST00000308271 SLITRK4Q8IW52 837 aa18.77■□□□□ 0.59
USP48-201ENST00000308271 ACDQ96AP0 544 aa18.77■□□□□ 0.59
USP48-201ENST00000308271 PKP4Q99569 1192 aa18.77■□□□□ 0.59
USP48-201ENST00000308271 CCDC3Q9BQI4 270 aa18.77■□□□□ 0.59
USP48-201ENST00000308271 MANSC4A6NHS7 340 aaPredicted RBP18.76■□□□□ 0.59
USP48-201ENST00000308271 PITPNM1O00562 1244 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 KIAA0513O60268 411 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 BCKDHAP12694 445 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 ADAM15Q13444 863 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 RAPSNQ13702 412 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 ZNF311Q5JNZ3 666 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 KLHL36Q8N4N3 616 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 LINC00471Q8N535 108 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 SMG7Q92540 1137 aaKnown RBP18.76■□□□□ 0.59
USP48-201ENST00000308271 CNDP2Q96KP4 475 aaKnown RBP18.76■□□□□ 0.59
USP48-201ENST00000308271 ANKMY1Q9P2S6 941 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 NFKBIL1Q9UBC1 381 aaPredicted RBP18.76■□□□□ 0.59
USP48-201ENST00000308271 INTS6Q9UL03 887 aaKnown RBP18.76■□□□□ 0.59
USP48-201ENST00000308271 PCDHGA8Q9Y5G5 932 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 STBD1O95210 358 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms