RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 HSF5Q4G112 596 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 TIGD2Q4W5G0 525 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 WDR45BQ5MNZ6 344 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 MLIPQ5VWP3 458 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 C8orf82Q6P1X6 216 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 OAFQ86UD1 273 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ATCAYQ86WG3 371 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 FAM98AQ8NCA5 519 aaKnown RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 TWIST2Q8WVJ9 160 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 PMEPA1Q969W9 287 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 COL21A1Q96P44 957 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 FERD3LQ96RJ6 166 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 COLEC11Q9BWP8 271 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 SLC39A8Q9C0K1 460 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 SLC22A4Q9H015 551 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 IKZF4Q9H2S9 585 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ACTR8Q9H981 624 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 NANSQ9NR45 359 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ERVK-18Q9QC07 812 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 COMMD3Q9UBI1 195 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 HMGXB4Q9UGU5 601 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 KLK4Q9Y5K2 254 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 COL5A3P25940 1745 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 ELOVL7A1L3X0 281 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 OR10H3O60404 316 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 RPLP0P05388 317 aaKnown RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 PEPDP12955 493 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ALDH3B1P43353 468 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 GNA12Q03113 381 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 PCDH1Q08174 1060 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 SEMA3BQ13214 749 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ATXN7L3Q14CW9 347 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 PM20D1Q6GTS8 502 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 MILR1Q7Z6M3 343 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 GTPBP3Q969Y2 492 aaKnown RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 C16orf58Q96GQ5 468 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 GPR20Q99678 358 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 IGFLR1Q9H665 355 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 OAZ3Q9UMX2 235 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 A0A1W2PQ67 120 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 BCKDKO14874 412 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 WNT9AO14904 365 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 KHNYNO15037 678 aaKnown RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 NUPL2O15504 423 aaKnown RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 ZNF208O43345 1280 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ACSL4O60488 711 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 OAZ2O95190 189 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 SNAP29O95721 258 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 MSX2P35548 267 aaPredicted RBP6.25□□□□□ -1.41
VPS35-201ENST00000299138 HTR2BP41595 481 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 SUOXP51687 545 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 HECTD2Q5U5R9 776 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ALG1LQ6GMV1 187 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 GK5Q6ZS86 529 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ACOT1Q86TX2 421 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 UMODL1-AS1Q8N2C9 162 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 OR13J1Q8NGT2 312 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 CSGALNACT1Q8TDX6 532 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 RELTQ969Z4 430 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 RAD51AP1Q96B01 352 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 LGMNQ99538 433 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 NPAS2Q99743 824 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 APBA2Q99767 749 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 ITPAQ9BY32 194 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 AP5M1Q9H0R1 490 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 FBXO44Q9H4M3 255 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 GFOD1Q9NXC2 390 aa6.25□□□□□ -1.41
VPS35-201ENST00000299138 RPP40O75818 363 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 PGLSO95336 258 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 SCGB1D1O95968 90 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PLK1P53350 603 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ZNF155Q12901 538 aaPredicted RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 MAB21L1Q13394 359 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ABCA11PQ4W5N1 156 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ZNF517Q6ZMY9 492 aaPredicted RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 GCNT7Q6ZNI0 430 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 MAVSQ7Z434 540 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ASCC1Q8N9N2 400 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 ANGPTL6Q8NI99 470 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 FRZBQ92765 325 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PPP1R16AQ96I34 528 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 MAPKAP1Q9BPZ7 522 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 POLR1EQ9GZS1 481 aaKnown RBP6.24□□□□□ -1.41
VPS35-201ENST00000299138 NIPAL2Q9H841 368 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 C19orf12Q9NSK7 152 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 CKLFQ9UBR5 152 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 OR12D3Q9UGF7 316 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 EGFL7Q9UHF1 273 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 PCDHGB3Q9Y5G1 929 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 FKBP7Q9Y680 259 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 YDJCA8MPS7 323 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 TMEM127O75204 238 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 RP2O75695 350 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 C22orf31O95567 290 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 IFNA17P01571 189 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 ZNF20P17024 532 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 TYMPP19971 482 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 CRHBPP24387 322 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 CTSKP43235 329 aa6.24□□□□□ -1.41
VPS35-201ENST00000299138 DAOAP59103 153 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms