RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 COLQQ9Y215 455 aaPredicted RBP13.77□□□□□ -0.21
C9orf3-202ENST00000297979 C15orf41Q9Y2V0 281 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 PCDHA9Q9Y5H5 950 aa13.77□□□□□ -0.21
C9orf3-202ENST00000297979 POM121BA6NF01 834 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 SOX1O00570 391 aaPredicted RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 MAN2B1O00754 1011 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 IL6P05231 212 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 SDC1P18827 310 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 HNRNPA2B1P22626 353 aaKnown RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 VHLP40337 213 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 ATXN3P54252 364 aaPredicted RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 CLDN8P56748 225 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 SLBPQ14493 270 aaKnown RBP eCLIP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 FAM174BQ3ZCQ3 159 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 WLSQ5T9L3 541 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 DUS1LQ6P1R4 473 aaKnown RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 LILRB2Q8N423 598 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 KRTCAP2Q8N6L1 136 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 NUDT8Q8WV74 236 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 NRG4Q8WWG1 115 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 SLC13A3Q8WWT9 602 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 FCRL1Q96LA6 429 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 HAUS8Q9BT25 410 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 PCDHAC1Q9H158 963 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 FGF22Q9HCT0 170 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 CMTM6Q9NX76 183 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 C15orf38-AP3S2A0A0A6YYH1 394 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 PRSS38A1L453 326 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 PRR19A6NJB7 356 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 ZNF839A8K0R7 811 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 CLNS1AP54105 237 aaKnown RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 MLF2Q15773 248 aaPredicted RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 SPATS1Q496A3 300 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 TMEM31Q5JXX7 168 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 NOXRED1Q6NXP6 359 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 NXPE4Q6UWF7 544 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 PRR23BQ6ZRT6 265 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 Q6ZS52 159 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 ARPINQ7Z6K5 226 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 FLCNQ8NFG4 579 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 HUS1BQ8NHY5 278 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 DNAJB14Q8TBM8 379 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 TMEM125Q96AQ2 219 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 METTL2AQ96IZ6 378 aaKnown RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 SPACA7Q96KW9 195 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 INSM2Q96T92 566 aaPredicted RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 POLMQ9NP87 494 aaPredicted RBP13.76□□□□□ -0.21
C9orf3-202ENST00000297979 PLEKHM1Q9Y4G2 1056 aa13.76□□□□□ -0.21
C9orf3-202ENST00000297979 MAGEB17A8MXT2 336 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 H3BNX3 289 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 HSD17B1P14061 328 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 IDSP22304 550 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 LAPTM5Q13571 262 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 NFATC4Q14934 902 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 CYP2A13Q16696 494 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 SPANXN4Q5MJ08 99 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 C6orf10Q5SRN2 563 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 ADNP2Q6IQ32 1131 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 ZFP1Q6P2D0 407 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 C2orf73Q8N5S3 287 aaPredicted RBP13.75□□□□□ -0.21
C9orf3-202ENST00000297979 TSSK3Q96PN8 268 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 FERD3LQ96RJ6 166 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 MENTQ9BUN1 341 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 PRM3Q9NNZ6 103 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 DCAF16Q9NXF7 216 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 SLAMF8Q9P0V8 285 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 USP36Q9P275 1121 aaKnown RBP13.75□□□□□ -0.21
C9orf3-202ENST00000297979 PIPSLA2A3N6 862 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 PGRP06401 933 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 TACR1P25103 407 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 MRPS22P82650 360 aaKnown RBP13.75□□□□□ -0.21
C9orf3-202ENST00000297979 ACSM2AQ08AH3 577 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 TOMM20Q15388 145 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 HIST2H2ACQ16777 129 aaPredicted RBP13.75□□□□□ -0.21
C9orf3-202ENST00000297979 ACSM2BQ68CK6 577 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 HIST2H2AA3Q6FI13 130 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 SPATA24Q86W54 205 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 LAS2Q8IYD9 372 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 KIAA2013Q8IYS2 634 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 RAB42Q8N4Z0 105 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 HLA-CQ95604 372 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 OR2M4Q96R27 311 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 IER2Q9BTL4 223 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 CARS2Q9HA77 564 aaKnown RBP13.75□□□□□ -0.21
C9orf3-202ENST00000297979 RUVBL1Q9Y265 456 aaKnown RBP13.75□□□□□ -0.21
C9orf3-202ENST00000297979 CA5BQ9Y2D0 317 aa13.75□□□□□ -0.21
C9orf3-202ENST00000297979 STAMBPO95630 424 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 SEMA4FO95754 770 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 CCDC159P0C7I6 412 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 YBX1P67809 324 aaKnown RBP13.74□□□□□ -0.21
C9orf3-202ENST00000297979 DLEU7Q6UYE1 221 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 ZNF852Q6ZMS4 543 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 HID1Q8IV36 788 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 PGBD3Q8N328 593 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 ZFPM2Q8WW38 1151 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 EBPLQ9BY08 206 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 ZNF304Q9HCX3 659 aa13.74□□□□□ -0.21
C9orf3-202ENST00000297979 IMP3Q9NV31 184 aaKnown RBP13.74□□□□□ -0.21
C9orf3-202ENST00000297979 DNAAF2Q9NVR5 837 aaKnown RBP13.74□□□□□ -0.21
C9orf3-202ENST00000297979 EBF1Q9UH73 591 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms