RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CHPFQ8IZ52 775 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 EID3Q8N140 333 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 SVOPLQ8N434 492 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 SH3KBP1Q96B97 665 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 ZFYVE19Q96K21 471 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 BARD1Q99728 777 aaKnown RBP19.4■□□□□ 0.7
VPS53-201ENST00000291074 NAA50Q9GZZ1 169 aaKnown RBP19.4■□□□□ 0.7
VPS53-201ENST00000291074 ADNPQ9H2P0 1102 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 MAGIXQ9H6Y5 334 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 AASDHPPTQ9NRN7 309 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 DKK3Q9UBP4 350 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 SH2B3Q9UQQ2 575 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 EVPLLA8MZ36 301 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 RECQL5O94762 991 aaPredicted RBP19.4■□□□□ 0.7
VPS53-201ENST00000291074 ADH5P11766 374 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 ACPPP15309 386 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 CAMK1Q14012 370 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 THAP5Q7Z6K1 395 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 C8orf59Q8N0T1 100 aaPredicted RBP19.4■□□□□ 0.7
VPS53-201ENST00000291074 NEIL2Q969S2 332 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 RBM4BQ9BQ04 359 aaKnown RBP19.4■□□□□ 0.7
VPS53-201ENST00000291074 FAM83CQ9BQN1 747 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 RBM4Q9BWF3 364 aaKnown RBP19.4■□□□□ 0.7
VPS53-201ENST00000291074 EXD2Q9NVH0 621 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 ABCG2Q9UNQ0 655 aa19.4■□□□□ 0.7
VPS53-201ENST00000291074 DIRAS1O95057 198 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 SOD1P00441 154 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 VIPR2P41587 438 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 TMEM26Q6ZUK4 368 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 ZDHHC21Q8IVQ6 265 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 PJA1Q8NG27 643 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 OR5K1Q8NHB7 308 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 RAD18Q9NS91 495 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 FBXO10Q9UK96 956 aa19.39■□□□□ 0.7
VPS53-201ENST00000291074 PRRT4C9JH25 899 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 H0YIV9 168 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 QSOX1O00391 747 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 TLL1O43897 1013 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 TPD52P55327 224 aaPredicted RBP19.39■□□□□ 0.69
VPS53-201ENST00000291074 MEP1AQ16819 746 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 HKDC1Q2TB90 917 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 CTU2Q2VPK5 515 aaKnown RBP19.39■□□□□ 0.69
VPS53-201ENST00000291074 TMPRSS11BQ86T26 416 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 SFTPA1Q8IWL2 248 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 ZZZ3Q8IYH5 903 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 OR7G3Q8NG95 312 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 OR56A3Q8NH54 315 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 HUS1BQ8NHY5 278 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 ATL1Q8WXF7 558 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 OTUB2Q96DC9 234 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 MAGEB10Q96LZ2 347 aaPredicted RBP19.39■□□□□ 0.69
VPS53-201ENST00000291074 USE1Q9NZ43 259 aa19.39■□□□□ 0.69
VPS53-201ENST00000291074 RUVBL1Q9Y265 456 aaKnown RBP19.39■□□□□ 0.69
VPS53-201ENST00000291074 MRPS23Q9Y3D9 190 aaKnown RBP19.39■□□□□ 0.69
VPS53-201ENST00000291074 XYLBO75191 536 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 EPN2O95208 641 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 KCNK5O95279 499 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 TRPC1P48995 793 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 MAPK10P53779 464 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 SRSF11Q05519 484 aaKnown RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 MSANTD1Q6ZTZ1 278 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 VTCN1Q7Z7D3 282 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 C11orf24Q96F05 449 aaPredicted RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 DTD2Q96FN9 168 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 YTHDF1Q9BYJ9 559 aaKnown RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 OR2AG1Q9H205 316 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 TMEFF2Q9UIK5 374 aaPredicted RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 H3BM21 787 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 MITFO75030 526 aaPredicted RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 ATE1O95260 518 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 HNF4AP41235 474 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 GTF2H3Q13889 308 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 CATSPEREQ5SY80 951 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 TTC23Q5W5X9 447 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 R3HCC1LQ7Z5L2 792 aaKnown RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 SERPINA11Q86U17 422 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 PTOV1Q86YD1 416 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 TRAPPC5Q8IUR0 188 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 CFAP206Q8IYR0 622 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 ZNF480Q8WV37 535 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 BADQ92934 168 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 hCG_2039718K7EN88 272 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 CCNDBP1O95273 360 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 SRPRAP08240 638 aaKnown RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 SLC6A11P48066 632 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 ST8SIA6P61647 398 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 RPS13P62277 151 aaKnown RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 TBPL1P62380 186 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 VMACQ2NL98 169 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 DPY19L1Q2PZI1 675 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 TBC1D25Q3MII6 688 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 ZNF773Q6PK81 442 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 ZNF555Q8NEP9 628 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 OR8J2Q8NGG1 315 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 ARRDC3Q96B67 414 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 ZNF707Q96C28 371 aaPredicted RBP19.38■□□□□ 0.69
VPS53-201ENST00000291074 LRIG1Q96JA1 1093 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 COQ10AQ96MF6 247 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 RDH12Q96NR8 316 aa19.38■□□□□ 0.69
VPS53-201ENST00000291074 RAD9AQ99638 391 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms