RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 DDX6P26196 483 aaKnown RBP eCLIP10.46□□□□□ -0.73
CD44-201ENST00000263398 S100GP29377 79 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 VIPR1P32241 457 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 NUDT6P53370 316 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 OR2B6P58173 313 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 SLC10A2Q12908 348 aaPredicted RBP10.46□□□□□ -0.73
CD44-201ENST00000263398 PPIGQ13427 754 aaKnown RBP eCLIP10.46□□□□□ -0.73
CD44-201ENST00000263398 LRRC32Q14392 662 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 PTPRCAPQ14761 206 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 SNAP47Q5SQN1 464 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 TPRG1LQ5T0D9 272 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 STEAP4Q687X5 459 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 XKR5Q6UX68 686 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 Q6ZVU0 165 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 NPAS3Q8IXF0 933 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 KLHL36Q8N4N3 616 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 OR5AK3PQ8NH89 298 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 FBXL8Q96CD0 374 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 PSKH2Q96QS6 385 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 SLC22A4Q9H015 551 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 COMMD4Q9H0A8 199 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 NEUROD4Q9HD90 331 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 FARSBQ9NSD9 589 aaKnown RBP10.46□□□□□ -0.73
CD44-201ENST00000263398 TMLHEQ9NVH6 421 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 CYTH4Q9UIA0 394 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 RNF11Q9Y3C5 154 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 PRAMEF33A0A0G2JMD5 474 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 A0A1W2PQ72 361 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 PRAMEF10O60809 474 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 ATP6V1G1O75348 118 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 RB1P06400 928 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 SLC35E2BP0CK96 405 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 SLC15A1P46059 708 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 AVPR1BP47901 424 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 CREB5Q02930 508 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 MEP1AQ16819 746 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 PPP1R3AQ16821 1122 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 ZNF461Q8TAF7 563 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 HSH2DQ96JZ2 352 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 WDR26Q9H7D7 661 aa10.46□□□□□ -0.73
CD44-201ENST00000263398 ZNF879B4DU55 563 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 ARVCFO00192 962 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 POP7O75817 140 aaKnown RBP10.46□□□□□ -0.74
CD44-201ENST00000263398 TSPAN9O75954 239 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 ALAS2P22557 587 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 NDUFS1P28331 727 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 GRIK2Q13002 908 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 IDNKQ5T6J7 187 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 KIAA1614Q5VZ46 1190 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 ADGRD2Q7Z7M1 963 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 IQCHQ86VS3 1027 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 CMTM8Q8IZV2 173 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 NXPE1Q8N323 547 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 CRYGNQ8WXF5 182 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 ZSWIM3Q96MP5 696 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 STRA6Q9BX79 667 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 TMEM165Q9HC07 324 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 TCF7L1Q9HCS4 588 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 CCM2LQ9NUG4 571 aaPredicted RBP10.46□□□□□ -0.74
CD44-201ENST00000263398 MALT1Q9UDY8 824 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 PRKAB1Q9Y478 270 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 RBM7Q9Y580 266 aaKnown RBP10.46□□□□□ -0.74
CD44-201ENST00000263398 UPK3BL1B0FP48 263 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 UPK3BL2E5RIL1 263 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 H0YAE9 185 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 ONECUT3O60422 494 aaPredicted RBP10.46□□□□□ -0.74
CD44-201ENST00000263398 DIRAS1O95057 198 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 OAS1P00973 400 aaKnown RBP10.46□□□□□ -0.74
CD44-201ENST00000263398 PRKACGP22612 351 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 MAT2AP31153 395 aaKnown RBP10.46□□□□□ -0.74
CD44-201ENST00000263398 SMSP52788 366 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 RING1Q06587 406 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 CRHR2Q13324 411 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 SP140Q13342 867 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 ZNF404Q494X3 552 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 LRRC66Q68CR7 880 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 KIAA1161Q6NSJ0 714 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 TMIGD1Q6UXZ0 262 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 CEACAM20Q6UY09 585 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 KBTBD7Q8WVZ9 684 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 CNDP2Q96KP4 475 aaKnown RBP10.46□□□□□ -0.74
CD44-201ENST00000263398 UCK2Q9BZX2 261 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 EHD1Q9H4M9 534 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 IL36AQ9UHA7 158 aa10.46□□□□□ -0.74
CD44-201ENST00000263398 HMGB3O15347 200 aaKnown RBP10.45□□□□□ -0.74
CD44-201ENST00000263398 BCHEP06276 602 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 C7P10643 843 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 ACP5P13686 325 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 AKT2P31751 481 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 ACTR1BP42025 376 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 DNASE1L1P49184 302 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 ACTR1AP61163 376 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 PITPNAQ00169 270 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 SCAPQ12770 1279 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 CBLBQ13191 982 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 GPRC6AQ5T6X5 926 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 BTN2A1Q7KYR7 527 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 LRRTM4Q86VH4 590 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 OR8J3Q8NGG0 315 aa10.45□□□□□ -0.74
CD44-201ENST00000263398 TFGQ92734 400 aaPredicted RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms