RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NCSTNQ92542 709 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 PIWIL1Q96J94 861 aaKnown RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 ZNF641Q96N77 438 aaPredicted RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 PTGES2Q9H7Z7 377 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 TTC24A2A3L6 582 aaPredicted RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 PRKCHP24723 683 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 DNAJA1P31689 397 aaKnown RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 MAP3K8P41279 467 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 OR3A3P47888 321 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 OR3A2P47893 321 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 MVKQ03426 396 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 TARDBPQ13148 414 aaKnown RBP eCLIP18.63■□□□□ 0.574e-11■■■□□ 19.2
UPF1-201ENST00000262803 DAG1Q14118 895 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 SIRPB2Q5JXA9 342 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 RBM48Q5RL73 367 aaKnown RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 LRIF1Q5T3J3 769 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 GPR22Q99680 433 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 MAPKAP1Q9BPZ7 522 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 CLEC4AQ9UMR7 237 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 SOCS5O75159 536 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 SNX4O95219 450 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 AZGP1P25311 298 aaKnown RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 SHMT2P34897 504 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 VLDLRP98155 873 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 PAFAH1B3Q15102 231 aaKnown RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 UBAP2Q5T6F2 1119 aaKnown RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 IQCF2Q8IXL9 164 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 MINDY2Q8NBR6 621 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 TMEM125Q96AQ2 219 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 COPS4Q9BT78 406 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 SLC2A6Q9UGQ3 507 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 ZNF221Q9UK13 617 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 OAZ3Q9UMX2 235 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 GOLGA4Q13439 2230 aaKnown RBP18.63■□□□□ 0.57
UPF1-201ENST00000262803 ECHS1P30084 290 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 HMGCS1Q01581 520 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 CARTPTQ16568 116 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 FBXO43Q4G163 708 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 ABCA11PQ4W5N1 156 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 GPR153Q6NV75 609 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 PHTF2Q8N3S3 785 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 OR2L3Q8NG85 312 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 TMEM248Q9NWD8 314 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 ZNF639Q9UID6 485 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 TTLL8A6PVC2 850 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 RBM34P42696 430 aaKnown RBP18.62■□□□□ 0.57
UPF1-201ENST00000262803 ZNF630Q2M218 657 aaPredicted RBP18.62■□□□□ 0.57
UPF1-201ENST00000262803 ITPRIPL2Q3MIP1 535 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 THOC7Q6I9Y2 204 aaKnown RBP18.62■□□□□ 0.57
UPF1-201ENST00000262803 C22orf39Q6P5X5 142 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 PMEPA1Q969W9 287 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 INSL5Q9Y5Q6 135 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 FKBP7Q9Y680 259 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 LTN1O94822 1766 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 ABCC6O95255 1503 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 NPIPA5E9PKD4 350 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 ZNF670-ZNF695F2Z2N8 137 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 ARPC2O15144 300 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 ACRP10323 421 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 HOXB2P14652 356 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 DUOXA1Q1HG43 343 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 COLEC12Q5KU26 742 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 ALG1LQ6GMV1 187 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 MMAAQ8IVH4 418 aaKnown RBP18.62■□□□□ 0.57
UPF1-201ENST00000262803 ZSCAN1Q8NBB4 408 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 ZNF548Q8NEK5 533 aaPredicted RBP18.62■□□□□ 0.57
UPF1-201ENST00000262803 KAT2AQ92830 837 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 COQ8BQ96D53 544 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 NXPE2Q96DL1 559 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 FBRSQ9HAH7 460 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 C11orf16Q9NQ32 467 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 MS4A12Q9NXJ0 267 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 NPIPA1Q9UND3 350 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 FAM221BA6H8Z2 402 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 UGT1A6P19224 532 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 UGT1A1P22309 533 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 UGT1A4P22310 534 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 AMZ1Q400G9 498 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 ZFP69Q49AA0 526 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 PLEKHS1Q5SXH7 462 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 ARHGAP40Q5TG30 622 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 RNF19BQ6ZMZ0 732 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 KBTBD6Q86V97 674 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 SIAH1Q8IUQ4 282 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 SIGLEC10Q96LC7 697 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 EHD1Q9H4M9 534 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 FBXL12Q9NXK8 326 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 COL1A1P02452 1464 aaPredicted RBP18.62■□□□□ 0.57
UPF1-201ENST00000262803 HSD11B1P28845 292 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 OLIG2Q13516 323 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 SYT16Q17RD7 645 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 LRRC73Q5JTD7 316 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 C6orf89Q6UWU4 347 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 GALNT15Q8N3T1 639 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 SLC35A5Q9BS91 424 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 DERL2Q9GZP9 239 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 C1orf21Q9H246 121 aa18.62■□□□□ 0.57
UPF1-201ENST00000262803 FAM208AQ9UK61 1670 aaKnown RBP18.62■□□□□ 0.57
UPF1-201ENST00000262803 SLC16A5O15375 505 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 TPD52L2O43399 206 aaKnown RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms