RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 RHOAP61586 193 aa12.6□□□□□ -0.39
SNX1-201ENST00000261889 ACVR1Q04771 509 aa12.6□□□□□ -0.39
SNX1-201ENST00000261889 TAF1AQ15573 450 aaPredicted RBP12.6□□□□□ -0.39
SNX1-201ENST00000261889 CHRNA6Q15825 494 aa12.6□□□□□ -0.39
SNX1-201ENST00000261889 COQ5Q5HYK3 327 aa12.6□□□□□ -0.39
SNX1-201ENST00000261889 DEPDC1Q5TB30 811 aa12.6□□□□□ -0.39
SNX1-201ENST00000261889 PRAMEF9Q5VWM5 478 aa12.6□□□□□ -0.39
SNX1-201ENST00000261889 GPR149Q86SP6 731 aa12.6□□□□□ -0.39
SNX1-201ENST00000261889 CCDC117Q8IWD4 279 aaPredicted RBP12.6□□□□□ -0.39
SNX1-201ENST00000261889 SH3BP4Q9P0V3 963 aa12.6□□□□□ -0.39
SNX1-201ENST00000261889 GON4LQ3T8J9 2241 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 ARID1BQ8NFD5 2236 aaPredicted RBP12.59□□□□□ -0.39
SNX1-201ENST00000261889 C2orf78A6NCI8 922 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 IFI30P13284 250 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 CASP3P42574 277 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 RAB25P57735 213 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 WDR53Q7Z5U6 358 aaPredicted RBP12.59□□□□□ -0.39
SNX1-201ENST00000261889 SLC5A8Q8N695 610 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 LILRA3Q8N6C8 439 aaPredicted RBP12.59□□□□□ -0.39
SNX1-201ENST00000261889 TP53I13Q8NBR0 393 aaPredicted RBP12.59□□□□□ -0.39
SNX1-201ENST00000261889 OR8J3Q8NGG0 315 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 NRTNQ99748 197 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 SLX1AQ9BQ83 275 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 CPPED1Q9BRF8 314 aaPredicted RBP12.59□□□□□ -0.39
SNX1-201ENST00000261889 CNPPD1Q9BV87 410 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 GORASP2Q9H8Y8 452 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 PDFQ9HBH1 243 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 ABCB9Q9NP78 766 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 DOCK4Q8N1I0 1966 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 KRT75O95678 551 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 FABP3P05413 133 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 EPB42P16452 691 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 PIK3CBP42338 1070 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 CPT1AP50416 773 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 ARHGDIAP52565 204 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 ARF5P84085 180 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 NPRL3Q12980 569 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 LYPD8Q6UX82 237 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 TPGS1Q6ZTW0 290 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 HS6ST3Q8IZP7 471 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 GPR150Q8NGU9 434 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 MED8Q96G25 268 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 PPP3R2Q96LZ3 170 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 CDADC1Q9BWV3 514 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 REEP1Q9H902 201 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 C11orf16Q9NQ32 467 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 USE1Q9NZ43 259 aa12.59□□□□□ -0.39
SNX1-201ENST00000261889 SMLR1H3BR10 107 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 PCDH7O60245 1069 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 COX7A2P14406 83 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 CORO1AP31146 461 aaKnown RBP12.58□□□□□ -0.39
SNX1-201ENST00000261889 PPP5CP53041 499 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 CAV3P56539 151 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 TSTQ16762 297 aaKnown RBP12.58□□□□□ -0.39
SNX1-201ENST00000261889 HKDC1Q2TB90 917 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 ARMCX4Q5H9R4 360 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 PAQR6Q6TCH4 344 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 NLRP8Q86W28 1048 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 STX19Q8N4C7 294 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 ZNF486Q96H40 463 aaPredicted RBP12.58□□□□□ -0.39
SNX1-201ENST00000261889 FYTTD1Q96QD9 318 aaKnown RBP12.58□□□□□ -0.39
SNX1-201ENST00000261889 CITED4Q96RK1 184 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 EMILIN2Q9BXX0 1053 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 COQ3Q9NZJ6 369 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 B3GNT3Q9Y2A9 372 aa12.58□□□□□ -0.39
SNX1-201ENST00000261889 MEN1O00255 615 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 IDH3BO43837 385 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 CRATP43155 626 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 SNRPD2P62316 118 aaKnown RBP12.58□□□□□ -0.4
SNX1-201ENST00000261889 RPS26P62854 115 aaKnown RBP12.58□□□□□ -0.4
SNX1-201ENST00000261889 PARP15Q460N3 678 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 CLLU1OSQ5K130 101 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 NEK5Q6P3R8 708 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 SYT12Q8IV01 421 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 SIX5Q8N196 739 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 UBASH3BQ8TF42 649 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 SLC22A12Q96S37 553 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 HOXD1Q9GZZ0 328 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 CLMPQ9H6B4 373 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 THG1LQ9NWX6 298 aaKnown RBP12.58□□□□□ -0.4
SNX1-201ENST00000261889 SCML2Q9UQR0 700 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 MYO16Q9Y6X6 1858 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 OR2A25A4D2G3 310 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 PDZK1P1A8MUH7 402 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 CST5P28325 142 aaPredicted RBP12.58□□□□□ -0.4
SNX1-201ENST00000261889 ZNF135P52742 658 aaPredicted RBP12.58□□□□□ -0.4
SNX1-201ENST00000261889 CD83Q01151 205 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 MEF2AQ02078 507 aaPredicted RBP12.58□□□□□ -0.4
SNX1-201ENST00000261889 LRRC74AQ0VAA2 488 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 ST3GAL4Q11206 333 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 SLAMF1Q13291 335 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 RTP2Q5QGT7 225 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 COX20Q5RI15 118 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 THOC7Q6I9Y2 204 aaKnown RBP12.58□□□□□ -0.4
SNX1-201ENST00000261889 RTN4RL1Q86UN2 441 aaPredicted RBP12.58□□□□□ -0.4
SNX1-201ENST00000261889 MMP21Q8N119 569 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 TMEM132CQ8N3T6 1108 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 SVOPLQ8N434 492 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 SUSD3Q96L08 255 aa12.58□□□□□ -0.4
SNX1-201ENST00000261889 C1orf74Q96LT6 269 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms