RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 KCNK5O95279 499 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 HSMCR30P0CW71 290 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 ARHGDIAP52565 204 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 DOC2AQ14183 400 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 CBX2Q14781 532 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-201ENST00000253024 STARD3Q14849 445 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 RGS21Q2M5E4 152 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 C22orf39Q6P5X5 142 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 ADCK1Q86TW2 530 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 TRIM73Q86UV7 250 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 MMP21Q8N119 569 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 NELL1Q92832 810 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 SCRN2Q96FV2 425 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 TRIM39Q9HCM9 518 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 CHCHD3Q9NX63 227 aaKnown RBP20.63■□□□□ 0.89
TRIM28-201ENST00000253024 THUMPD1Q9NXG2 353 aaKnown RBP20.63■□□□□ 0.89
TRIM28-201ENST00000253024 TAS2R16Q9NYV7 291 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 HCFC2Q9Y5Z7 792 aa20.63■□□□□ 0.89
TRIM28-201ENST00000253024 TRBV5-4A0A0C4DH59 114 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 FABP3P05413 133 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 CD6P30203 668 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 KDELR2P33947 212 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 MRPL19P49406 292 aaKnown RBP20.62■□□□□ 0.89
TRIM28-201ENST00000253024 METAP1P53582 386 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 SNRPD1P62314 119 aaKnown RBP20.62■□□□□ 0.89
TRIM28-201ENST00000253024 TP53BP2Q13625 1128 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 ZNF697Q5TEC3 545 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 OTOP2Q7RTS6 562 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 SVOPLQ8N434 492 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 UTP15Q8TED0 518 aaKnown RBP20.62■□□□□ 0.89
TRIM28-201ENST00000253024 ZNF641Q96N77 438 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-201ENST00000253024 SGK2Q9HBY8 427 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 RLIMQ9NVW2 624 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 FZD4Q9ULV1 537 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 PCDHGA10Q9Y5H3 936 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 LOC100506127A0A0U1RQW1 187 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 FAM220BPB1ANY3 271 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 ZNF701M0R085 212 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-201ENST00000253024 PCDH7O60245 1069 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 SOD2P04179 222 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 ATP1B2P14415 290 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-201ENST00000253024 CD9P21926 228 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 PCMT1P22061 227 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 PSMA3P25788 255 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 PFN3P60673 137 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 IFITM3Q01628 133 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 GAB1Q13480 694 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 VMACQ2NL98 169 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.62■□□□□ 0.89
TRIM28-201ENST00000253024 ATG9BQ674R7 924 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 TMPRSS11BQ86T26 416 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 NAGSQ8N159 534 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 KNL1Q8NG31 2342 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 ASB11Q8WXH4 323 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 MUL1Q969V5 352 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 TPT1P8Q9HAU6 139 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 C8orf4Q9NR00 106 aa20.62■□□□□ 0.89
TRIM28-201ENST00000253024 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-201ENST00000253024 J3KTA2 159 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 SLC16A8O95907 504 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 RRM2P31350 389 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 KRT20P35900 424 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 NRIP1P48552 1158 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 NKX3-2P78367 333 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 GANABQ14697 944 aaKnown RBP20.61■□□□□ 0.89
TRIM28-201ENST00000253024 SYTL3Q4VX76 610 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 COX20Q5RI15 118 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 PAGE2Q7Z2X7 111 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 HMGN2P46Q86SG4 172 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 SH3YL1Q96HL8 342 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-201ENST00000253024 SORBS1Q9BX66 1292 aaKnown RBP20.61■□□□□ 0.89
TRIM28-201ENST00000253024 DNMT3BQ9UBC3 853 aaKnown RBP20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ARHGEF33A8MVX0 844 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 LEFTY2O00292 366 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 TGFB1P01137 390 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ACRP10323 421 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 SEPHS1P49903 392 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ABHD18Q0P651 414 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ARSIQ5FYB1 569 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 CATSPEREQ5SY80 951 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 PTOV1Q86YD1 416 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 HERC2P3Q9BVR0 1158 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 SLC46A2Q9BY10 475 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 RBMX2Q9Y388 322 aaKnown RBP20.61■□□□□ 0.89
TRIM28-201ENST00000253024 RFPL2O75678 378 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 RETP07949 1114 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ANXA4P09525 319 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ETFAP13804 333 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 CCR2P41597 374 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 HTRA3P83110 453 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 MADCAM1Q13477 382 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 CALHM3Q86XJ0 350 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 HIPK1Q86Z02 1210 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ZZZ3Q8IYH5 903 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 AADATQ8N5Z0 425 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 PJA1Q8NG27 643 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 CIDECQ96AQ7 238 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-201ENST00000253024 REEP1Q9H902 201 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ENPP5Q9UJA9 477 aa20.61■□□□□ 0.89
TRIM28-201ENST00000253024 ZNF510Q9Y2H8 683 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms