RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 HERVK_113P63132 956 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 RPL19P84098 196 aaKnown RBP12.9□□□□□ -0.34
COL1A1-201ENST00000225964 SCN1BQ07699 218 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 SYPL2Q5VXT5 272 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 TMEM214Q6NUQ4 689 aaKnown RBP12.9□□□□□ -0.34
COL1A1-201ENST00000225964 DLK2Q6UY11 383 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 YTHDF3Q7Z739 585 aaKnown RBP12.9□□□□□ -0.34
COL1A1-201ENST00000225964 CAMK1GQ96NX5 476 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 ERVK-6Q9BXR3 956 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 DTLQ9NZJ0 730 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 TLL2Q9Y6L7 1015 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 E2F3O00716 465 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 F7P08709 466 aaPredicted RBP12.9□□□□□ -0.34
COL1A1-201ENST00000225964 MSX1P28360 303 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 NR0B1P51843 470 aaKnown RBP12.9□□□□□ -0.34
COL1A1-201ENST00000225964 MAZP56270 477 aaKnown RBP12.9□□□□□ -0.34
COL1A1-201ENST00000225964 IQCCQ4KMZ1 466 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 PAQR3Q6TCH7 311 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 HSDL2Q6YN16 418 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 ZNF598Q86UK7 904 aaKnown RBP12.9□□□□□ -0.34
COL1A1-201ENST00000225964 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.9□□□□□ -0.34
COL1A1-201ENST00000225964 DNAAF1Q8NEP3 725 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 ABHD5Q8WTS1 349 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 SLC17A6Q9P2U8 582 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 MAFFQ9ULX9 164 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 A0A1W2PRQ8 180 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 FAM221BA6H8Z2 402 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 NUAK1O60285 661 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 ECI2O75521 394 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 SEMA3DO95025 777 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 RFC2P35250 354 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 USP43Q70EL4 1123 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 LRRC70Q7Z2Q7 622 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 KLHDC7BQ96G42 594 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 CCDC120Q96HB5 630 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 ZNF599Q96NL3 588 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 SLC32A1Q9H598 525 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 ITM2CQ9NQX7 267 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 VNN3Q9NY84 501 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 CA14Q9ULX7 337 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 PDE10AQ9Y233 779 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 FAM227AF5H4B4 570 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 BLOC1S5-TXNDC5H3BN57 136 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 J3KR12 359 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 APLP1P51693 650 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 SELENOVP59797 346 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 CMTM8Q8IZV2 173 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 PCDH19Q8TAB3 1148 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 TMED9Q9BVK6 235 aa12.9□□□□□ -0.34
COL1A1-201ENST00000225964 PPEF2O14830 753 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 GATMP50440 423 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 LRRC66Q68CR7 880 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 FOXRED2Q8IWF2 684 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 C1orf52Q8N6N3 182 aaKnown RBP12.9□□□□□ -0.35
COL1A1-201ENST00000225964 OR8H1Q8NGG4 311 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 CMKLR1Q99788 373 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 RBCK1Q9BYM8 510 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 ZNF224Q9NZL3 707 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 GRHPRQ9UBQ7 328 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 MYO5BQ9ULV0 1848 aa12.9□□□□□ -0.35
COL1A1-201ENST00000225964 OR2AT4A6NND4 320 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 PLOD2O00469 737 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 SMAD9O15198 467 aaKnown RBP12.89□□□□□ -0.35
COL1A1-201ENST00000225964 HMGCS1Q01581 520 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 SLC3A1Q07837 685 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 SLC25A25Q6KCM7 469 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 JAGN1Q8N5M9 183 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 PAK6Q9NQU5 681 aaPredicted RBP12.89□□□□□ -0.35
COL1A1-201ENST00000225964 GNG8Q9UK08 70 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 WASF2Q9Y6W5 498 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 LEFTY2O00292 366 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 RAP2AP10114 183 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 POLR2CP19387 275 aaPredicted RBP12.89□□□□□ -0.35
COL1A1-201ENST00000225964 RPL6Q02878 288 aaKnown RBP12.89□□□□□ -0.35
COL1A1-201ENST00000225964 KIAA0930Q6ICG6 404 aaPredicted RBP12.89□□□□□ -0.35
COL1A1-201ENST00000225964 NKD2Q969F2 451 aaPredicted RBP12.89□□□□□ -0.35
COL1A1-201ENST00000225964 TM9SF2Q99805 663 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 CYTH4Q9UIA0 394 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 HCN2Q9UL51 889 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 RPL36Q9Y3U8 105 aaKnown RBP12.89□□□□□ -0.35
COL1A1-201ENST00000225964 J3QLW9 94 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 PSKH1P11801 424 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 ZNF19P17023 458 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 CHRNB2P17787 502 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 FRMD7Q6ZUT3 714 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 ZNF227Q86WZ6 799 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 EIF3KQ9UBQ5 218 aaKnown RBP12.89□□□□□ -0.35
COL1A1-201ENST00000225964 ZNF69Q9UC07 566 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 AGPSO00116 658 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 RNF13O43567 381 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 VNN1O95497 513 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 OPN1SWP03999 348 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 SNHG28P0DPA3 235 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 KCNQ1P51787 676 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 S100A10P60903 97 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 ID2Q02363 134 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 ADGRE1Q14246 886 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 GPAT4Q86UL3 456 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 OR2AP1Q8NGE2 309 aa12.89□□□□□ -0.35
COL1A1-201ENST00000225964 RBPJLQ9UBG7 517 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms