RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ZNF670-ZNF695F2Z2N8 137 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 TMEM127O75204 238 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ITPKBP27987 946 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 CSTF1Q05048 431 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 CYP4F3Q08477 520 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 AHSA2Q719I0 299 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ARMCX6Q7L4S7 300 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 C6orf120Q7Z4R8 191 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 RSC1A1Q92681 617 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 C12orf43Q96C57 262 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ACO2Q99798 780 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 TBL1XR1Q9BZK7 514 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 B4GALT7Q9UBV7 327 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 PRODH2Q9UF12 536 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 TMA7Q9Y2S6 64 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ANKRD33BA6NCL7 494 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 HCRTR2O43614 444 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 IL1BP01584 269 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 PABPC4LP0CB38 370 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 IFI35P80217 286 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ZNF404Q494X3 552 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ZNF773Q6PK81 442 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 SLC29A4Q7RTT9 530 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 DGLUCYQ7Z3D6 616 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ZDHHC21Q8IVQ6 265 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ARL14Q8N4G2 192 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 HDAC10Q969S8 669 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 CIDECQ96AQ7 238 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 RCN3Q96D15 328 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 KLHL42Q9P2K6 505 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 EIF3KQ9UBQ5 218 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 MGAT4BQ9UQ53 548 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 NOP16Q9Y3C1 178 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 NCKAP5O14513 1909 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 M0R036 132 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 SULT1C2O00338 296 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 NOBOXO60393 691 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ABCB7O75027 752 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 SEC14L2O76054 403 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 OAS1P00973 400 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 IFNA17P01571 189 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ZNF14P17017 642 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 RYKP34925 604 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 GPR143P51810 404 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ANTXR2P58335 489 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 CYP4F2P78329 520 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ADAM17P78536 824 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 DECR1Q16698 335 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 CRB2Q5IJ48 1285 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 MSANTD2Q6P1R3 559 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 WDR53Q7Z5U6 358 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 TFAP2DQ7Z6R9 452 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 PAQR7Q86WK9 346 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 TICAM1Q8IUC6 712 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ZNF283Q8N7M2 679 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 GDPD1Q8N9F7 314 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 SLC45A3Q96JT2 553 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 SMURF1Q9HCE7 757 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 KCNIP2Q9NS61 270 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 PEAK1Q9H792 1746 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 TLR5O60602 858 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 NTSR2O95665 410 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 H1F0P07305 194 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 TCEA1P23193 301 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 MTM1Q13496 603 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 WSCD2Q2TBF2 565 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 EPHA10Q5JZY3 1008 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 NBPF12Q5TAG4 269 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 PDE12Q6L8Q7 609 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 KANSL1Q7Z3B3 1105 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 SH3RF1Q7Z6J0 888 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 LPGAT1Q92604 370 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 URM1Q9BTM9 101 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 NIFKQ9BYG3 293 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 PCDH12Q9NPG4 1184 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 SPO11Q9Y5K1 396 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 FREM3P0C091 2139 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 LACTBL1A8MY62 500 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 GADD45GO95257 159 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 IFNGR1P15260 489 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 CHMP24386 653 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 TOB1P50616 345 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ABHD18Q0P651 414 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 IRF5Q13568 498 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ZNF433Q8N7K0 673 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 PRELID2Q8N945 189 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 CMTM7Q96FZ5 175 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 DUSP10Q9Y6W6 482 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 LRRC37A3O60309 1634 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 OR5K4A6NMS3 321 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 ART1P52961 327 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 NUDT6P53370 316 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 MAP2K5Q13163 448 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 VARS2Q5ST30 1063 aaKnown RBP5.93□□□□□ -1.46
VPS13D-201ENST00000011700 AADACL4Q5VUY2 407 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 C16orf46Q6P387 395 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 SLC36A4Q6YBV0 504 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 CHST9Q7L1S5 443 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 HTRA1Q92743 480 aa5.93□□□□□ -1.46
VPS13D-201ENST00000011700 KLHL15Q96M94 604 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms