RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 COLEC11Q9BWP8 271 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 CD244Q9BZW8 370 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ACTR8Q9H981 624 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZDHHC4Q9NPG8 344 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NENFQ9UMX5 172 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FAM171A2A8MVW0 826 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 LINC01387J3KSC0 135 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ACKR2O00590 384 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 NDST3O95803 873 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ATP1A1P05023 1023 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GRM7Q14831 915 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM35AQ53FP2 167 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 WBP2NLQ6ICG8 309 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 USP30Q70CQ3 517 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TAS1R2Q8TE23 839 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C2CD4CQ8TF44 421 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DYNLL2Q96FJ2 89 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 EEF2KMTQ96G04 330 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 LMF1Q96S06 567 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GSN-AS1Q9NRJ2 163 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GDAP2Q9NXN4 497 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PLK2Q9NYY3 685 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DIMT1Q9UNQ2 313 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MYRFQ9Y2G1 1151 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 RHBDD3Q9Y3P4 386 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 KHNYNO15037 678 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ADH1BP00325 375 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 BMPR1AP36894 532 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DGKGP49619 791 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 MROH9Q5TGP6 573 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 DPPA4Q7L190 304 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF276Q8N554 614 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SNAPC3Q92966 411 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PPWD1Q96BP3 646 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 PAFAH2Q99487 392 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 BTBD10Q9BSF8 475 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 WDR18Q9BV38 432 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 TRMT61BQ9BVS5 477 aaKnown RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 ITPAQ9BY32 194 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 SPRTNQ9H040 489 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 UCK1Q9HA47 277 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 C5AR2Q9P296 337 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FOXD3Q9UJU5 478 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-221ENST00000641996 GMPPBQ9Y5P6 360 aa3.49□□□□□ -1.85
SCN1A-221ENST00000641996 FAM234BA2RU67 622 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 KLF4O43474 513 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 LYPLA1O75608 230 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ITIH2P19823 946 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PAX6P26367 422 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 AKT2P31751 481 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 BLOC1S1P78537 153 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 OCRLQ01968 901 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FADDQ13158 208 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 COQ5Q5HYK3 327 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SUSD1Q6UWL2 747 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MR1Q95460 341 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PACRGQ96M98 296 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 WDR41Q9HAD4 459 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NRIP3Q9NQ35 241 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GPR83Q9NYM4 423 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 UACAQ9BZF9 1416 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 A0A1W2PPQ1 181 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 H0YIV9 168 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RAG2P55895 527 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 TAS2R39P59534 338 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PPATQ06203 517 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ITIH4Q14624 930 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PUM1Q14671 1186 aaKnown RBP eCLIP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FBXO47Q5MNV8 452 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 KCTD11Q693B1 232 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 GTF2H5Q6ZYL4 71 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 USP49Q70CQ1 688 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RAB43Q86YS6 212 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 RBM45Q8IUH3 476 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ARRDC4Q8NCT1 418 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 OR13C2Q8NGS9 318 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ATG101Q9BSB4 218 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 UCK2Q9BZX2 261 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SLA2Q9H6Q3 261 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 KLK14Q9P0G3 267 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 WHRNQ9P202 907 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 FEM1BQ9UK73 627 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ING4Q9UNL4 249 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ACOT7O00154 380 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SLC16A6O15403 523 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ARPC5O15511 151 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PRICKLE3O43900 615 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SERPIND1P05546 499 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 KLK3P07288 261 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 DCNP07585 359 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 PRKACGP22612 351 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 NAA10P41227 235 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 P2RY4P51582 365 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 POU6F1Q14863 301 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF169Q14929 603 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 MTHFSDQ2M296 383 aaKnown RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 SLX4IPQ5VYV7 408 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ARL9Q6T311 187 aa3.48□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF705AQ6ZN79 300 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-221ENST00000641996 LACC1Q8IV20 430 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms