RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ADGRE2Q9UHX3 823 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SH3BGRL2Q9UJC5 107 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SORCS3Q9UPU3 1222 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CPS1P31327 1500 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ATP6AP2A0A1C7CYW4 349 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CYP27B1O15528 508 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ADAM23O75077 832 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ATP6AP2O75787 350 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RNASEH2AO75792 299 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SNAP29O95721 258 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ADH4P08319 380 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RBP1P09455 135 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CTSHP09668 335 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CYP11B1P15538 503 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 BDNFP23560 247 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ABCG1P45844 678 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RPL14P50914 215 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SEC24CP53992 1094 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ABRAXAS2Q15018 415 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF674Q2M3X9 581 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RNASE12Q5GAN4 147 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM102AQ5T9C2 384 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM53Q6P2H8 277 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM270Q6UE05 265 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MOB1BQ7L9L4 216 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM126BQ8IUX1 230 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 HID1Q8IV36 788 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CFAP206Q8IYR0 622 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 BPIFB6Q8NFQ5 453 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 OR8K3Q8NH51 312 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UBA3Q8TBC4 463 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UBE2FQ969M7 185 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CENPNQ96H22 339 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 LPIN3Q9BQK8 851 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM83CQ9BQN1 747 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 KATNB1Q9BVA0 655 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM126AQ9BYI3 521 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FZD8Q9H461 694 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FN3KQ9H479 309 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PIF1Q9H611 641 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 WDR6Q9NNW5 1121 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PTGFRNQ9P2B2 879 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CAPN6Q9Y6Q1 641 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SETD1AO15047 1707 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TOPBP1Q92547 1522 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DENND4AQ7Z401 1863 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 C17orf113A0A1B0GUU1 675 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ANKRD33BA6NCL7 494 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 FAM205CA6NFA0 338 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 OR5F1O95221 314 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 STAU1O95793 577 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ITGB1P05556 798 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 EPHA3P29320 983 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CLK2P49760 499 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RAB5CP51148 216 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CRADDP78560 199 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 LIPEQ05469 1076 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 IRF5Q13568 498 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ANKDD1AQ495B1 522 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PLEKHG4Q58EX7 1191 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZPBP2Q6X784 338 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 HNRNPLLQ8WVV9 542 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 C1GALT1C1Q96EU7 318 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MED8Q96G25 268 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC41A3Q96GZ6 507 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PUS3Q9BZE2 481 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DEFB129Q9H1M3 183 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 GAREM1Q9H706 876 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CDHR5Q9HBB8 845 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RBM12Q9NTZ6 932 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RASD1Q9Y272 281 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TLR6Q9Y2C9 796 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PLEKHA6Q9Y2H5 1048 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PEPDP12955 493 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 TGM1P22735 817 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 DLSTP36957 453 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MMP12P39900 470 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 LUMP51884 338 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RPL7AP62424 266 aaKnown RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ADAM8P78325 824 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ARG2P78540 354 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 RFX4Q33E94 735 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ACAD10Q6JQN1 1059 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF852Q6ZMS4 543 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 CD101Q93033 1021 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF578Q96N58 590 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-219ENST00000641575 MAP3K3Q99759 626 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 OR2B2Q9GZK3 357 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 EMILIN3Q9NT22 766 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC2A6Q9UGQ3 507 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 GNG8Q9UK08 70 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHA6Q9UN73 950 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 SLC7A11Q9UPY5 501 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHA8Q9Y5H6 950 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 E9PAM4 449 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 J3QR89 54 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UGT1A9O60656 530 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 UGT2B11O75310 529 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 PET100P0DJ07 73 aa2.72□□□□□ -1.97
SCN1A-219ENST00000641575 YBX3P16989 372 aaKnown RBP eCLIP2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms