RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PRTGQ2VWP7 1150 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 TTLL9Q3SXZ7 439 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 GARNL3Q5VVW2 1013 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 RPUSD3Q6P087 351 aaKnown RBP17.57■□□□□ 0.4
CLN3-241ENST00000635861 ISLR2Q6UXK2 745 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 TMEM151BQ8IW70 566 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 FBXO15Q8NCQ5 510 aaPredicted RBP17.57■□□□□ 0.4
CLN3-241ENST00000635861 DNAJB14Q8TBM8 379 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 DPH7Q9BTV6 452 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 MRPS30Q9NP92 439 aaKnown RBP17.57■□□□□ 0.4
CLN3-241ENST00000635861 C14orf105Q9NVL8 296 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 KLHL42Q9P2K6 505 aa17.57■□□□□ 0.4
CLN3-241ENST00000635861 A0A1W2PQ72 361 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 MASP2O00187 686 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 USP1O94782 785 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 FBLP22087 321 aaKnown RBP17.56■□□□□ 0.4
CLN3-241ENST00000635861 RPA3P35244 121 aaPredicted RBP17.56■□□□□ 0.4
CLN3-241ENST00000635861 MFAP5Q13361 173 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 KCNJ11Q14654 390 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 ATG9BQ674R7 924 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 FBXO42Q6P3S6 717 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 CILP2Q8IUL8 1156 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 THOC3Q96J01 351 aaKnown RBP17.56■□□□□ 0.4
CLN3-241ENST00000635861 PLCD4Q9BRC7 762 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 SAMD15Q9P1V8 674 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 RUVBL2Q9Y230 463 aaKnown RBP17.56■□□□□ 0.4
CLN3-241ENST00000635861 NTNG1Q9Y2I2 539 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 MAU2Q9Y6X3 613 aa17.56■□□□□ 0.4
CLN3-241ENST00000635861 LOC105369274A0A096LPK9 316 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 LOC102723532A0A0G2JNH3 316 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 ARHGEF33A8MVX0 844 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 NRDCO43847 1150 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 EIF2S1P05198 315 aaKnown RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 MLNP12872 115 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 EDN3P14138 238 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 EZRP15311 586 aaKnown RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 KCNJ1P48048 391 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 AP2B1P63010 937 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 ABATP80404 500 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 PRDX1Q06830 199 aaKnown RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 DSG2Q14126 1118 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 FASTKQ14296 549 aaKnown RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 HIF1AQ16665 826 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 KLHL38Q2WGJ6 581 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 PARP9Q8IXQ6 854 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 LMNTD2Q8IXW0 634 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 OR4N4Q8N0Y3 316 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 METTL27Q8N6F8 245 aaPredicted RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 CABS1Q96KC9 395 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 C10orf90Q96M02 699 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 C3orf18Q9UK00 162 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 CRYL1Q9Y2S2 319 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 CREBBPQ92793 2442 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 FAM237BA0A1B0GVD1 139 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 H0YGG7 62 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 PNLIPRP1P54315 467 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 ARF3P61204 181 aaPredicted RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 CDC16Q13042 620 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 NEPROQ6NW34 567 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 CES3Q6UWW8 571 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 SHISA6Q6ZSJ9 500 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 CENPUQ71F23 418 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 NDUFAF7Q7L592 441 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 KCNMB4Q86W47 210 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 PAQR7Q86WK9 346 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 KBTBD2Q8IY47 623 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 RERGQ96A58 199 aaPredicted RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 TRIM56Q9BRZ2 755 aaKnown RBP17.55■□□□□ 0.4
CLN3-241ENST00000635861 TGIF2Q9GZN2 237 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 LZTFL1Q9NQ48 299 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 CSAG2Q9Y5P2 127 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 COMMD10Q9Y6G5 202 aa17.55■□□□□ 0.4
CLN3-241ENST00000635861 LRBAP50851 2863 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 A1L4Q6 167 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 KRT87PA6NCN2 255 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 GOLGA8KD6RF30 607 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 GOLGA8TH3BQL2 631 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 CEP104O60308 925 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 ALOX12BO75342 701 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 MED26O95402 600 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 MPC1LP0DKB6 136 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 ENO3P13929 434 aaPredicted RBP17.54■□□□□ 0.4
CLN3-241ENST00000635861 CXCR2P25025 360 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 PER3P56645 1201 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 Q0VFX4 171 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 INAQ16352 499 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 ACSBG2Q5FVE4 666 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 ICE2Q659A1 982 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 ZNF425Q6IV72 752 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 RIPOR1Q6ZS17 1223 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 CSNK1A1LQ8N752 337 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 FAR1Q8WVX9 515 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 KCNJ9Q92806 393 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 EBNA1BP2Q99848 306 aaKnown RBP17.54■□□□□ 0.4
CLN3-241ENST00000635861 ACAT2Q9BWD1 397 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 CCDC68Q9H2F9 335 aa17.54■□□□□ 0.4
CLN3-241ENST00000635861 XAB2Q9HCS7 855 aaKnown RBP17.54■□□□□ 0.4
CLN3-241ENST00000635861 MKKSQ9NPJ1 570 aaPredicted RBP17.54■□□□□ 0.4
CLN3-241ENST00000635861 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms