RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CSHL1Q14406 222 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 TSNQ15631 228 aaKnown RBP19.85■□□□□ 0.77
CLN3-240ENST00000631023 UBAP2Q5T6F2 1119 aaKnown RBP19.85■□□□□ 0.77
CLN3-240ENST00000631023 LCTLQ6UWM7 567 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 RNF44Q7L0R7 432 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 PAQR7Q86WK9 346 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 C17orf64Q86WR6 236 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 DSELQ8IZU8 1212 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 OR56A3Q8NH54 315 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 SLC44A1Q8WWI5 657 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 EGFL8Q99944 293 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 TXLNGQ9NUQ3 528 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 ACOT9Q9Y305 439 aa19.85■□□□□ 0.77
CLN3-240ENST00000631023 IGKV1-8A0A0C4DH67 115 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 ABHD2P08910 425 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 EZRP15311 586 aaKnown RBP19.84■□□□□ 0.77
CLN3-240ENST00000631023 CD1DP15813 335 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 AGXTP21549 392 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 RORAP35398 523 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 SLC26A3P40879 764 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 SERPINB9P50453 376 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 ARSFP54793 590 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 MC1RQ01726 317 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 GRM7Q14831 915 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 ZNF425Q6IV72 752 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 RHBDD2Q6NTF9 364 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 FBXO42Q6P3S6 717 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 ZNF517Q6ZMY9 492 aaPredicted RBP19.84■□□□□ 0.77
CLN3-240ENST00000631023 ADCK2Q7Z695 626 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 CMC1Q7Z7K0 106 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 ZNF285Q96NJ3 590 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 GPR87Q9BY21 358 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 FAM117AQ9C073 453 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 NMRAL1Q9HBL8 299 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 PCMTD2Q9NV79 361 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 TMEM184CQ9NVA4 438 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 TLK1Q9UKI8 766 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 LOC400499M0QZD8 3231 aa19.84■□□□□ 0.77
CLN3-240ENST00000631023 ZNF891A8MT65 544 aaPredicted RBP19.83■□□□□ 0.77
CLN3-240ENST00000631023 POC1B-GALNT4F8VUJ3 575 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 H7BY64 318 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 SLC35E2BP0CK96 405 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 NPPBP16860 134 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 VSX2P58304 361 aaPredicted RBP19.83■□□□□ 0.77
CLN3-240ENST00000631023 RPS15P62841 145 aaKnown RBP19.83■□□□□ 0.77
CLN3-240ENST00000631023 DNASE1L3Q13609 305 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 BMPR2Q13873 1038 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 FAM214AQ32MH5 1076 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 YOD1Q5VVQ6 348 aaPredicted RBP19.83■□□□□ 0.77
CLN3-240ENST00000631023 GPSM1Q86YR5 675 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 SPATA6LQ8N4H0 392 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 TTC29Q8NA56 475 aaPredicted RBP19.83■□□□□ 0.77
CLN3-240ENST00000631023 UHMK1Q8TAS1 419 aaKnown RBP19.83■□□□□ 0.77
CLN3-240ENST00000631023 PROKR1Q8TCW9 393 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 CT55Q8WUE5 264 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.83■□□□□ 0.775e-8■■■■■ 65.3
CLN3-240ENST00000631023 PRAP1Q96NZ9 151 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 PAFAH2Q99487 392 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 ENAMQ9NRM1 1142 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 IL17BQ9UHF5 180 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 CHD6Q8TD26 2715 aa19.83■□□□□ 0.77
CLN3-240ENST00000631023 ZFYVE26Q68DK2 2539 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 A0A087X1B8 175 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 KATNA1O75449 491 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 KRT38O76015 456 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 CTSBP07858 339 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 FAM153BP0C7A2 387 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 WT1P19544 449 aaPredicted RBP19.83■□□□□ 0.76
CLN3-240ENST00000631023 CNTFP26441 200 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 TYK2P29597 1187 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 SERPINB8P50452 374 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 TGFBIQ15582 683 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 FAM153CQ494X1 144 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 TAF1BQ53T94 588 aaPredicted RBP19.83■□□□□ 0.76
CLN3-240ENST00000631023 WASHC2DQ5SRD0 308 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 FAM199XQ6PEV8 388 aaPredicted RBP19.83■□□□□ 0.76
CLN3-240ENST00000631023 STAG3L4Q8TBR4 150 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 RERGQ96A58 199 aaPredicted RBP19.83■□□□□ 0.76
CLN3-240ENST00000631023 KIAA1191Q96A73 305 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 PYCR2Q96C36 320 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 C17orf62Q9BQA9 187 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 UNKQ9C0B0 810 aaKnown RBP19.83■□□□□ 0.76
CLN3-240ENST00000631023 CHST8Q9H2A9 424 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 AKIRIN1Q9H9L7 192 aaPredicted RBP19.83■□□□□ 0.76
CLN3-240ENST00000631023 SNX15Q9NRS6 342 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 CUEDC1Q9NWM3 386 aaPredicted RBP19.83■□□□□ 0.76
CLN3-240ENST00000631023 PCDHGA6Q9Y5G7 932 aa19.83■□□□□ 0.76
CLN3-240ENST00000631023 EXOC1LA0A1B0GW35 172 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 HMX2A2RU54 273 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 RIPK2O43353 540 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 EIF2S1P05198 315 aaKnown RBP19.82■□□□□ 0.76
CLN3-240ENST00000631023 LTA4HP09960 611 aaKnown RBP19.82■□□□□ 0.76
CLN3-240ENST00000631023 TNFRSF8P28908 595 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 CDKL4Q5MAI5 379 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 LGSNQ5TDP6 509 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 FRMPD2BQ6IN97 320 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 TCAIMQ8N3R3 496 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 STARD8Q92502 1023 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 ZNF180Q9UJW8 692 aa19.82■□□□□ 0.76
CLN3-240ENST00000631023 LOC105369274A0A096LPK9 316 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms