RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 STAG3L4Q8TBR4 150 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 ISL2Q96A47 359 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 KIAA1191Q96A73 305 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 NXNL1Q96CM4 212 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 CABS1Q96KC9 395 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 WWOXQ9NZC7 414 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 CD274Q9NZQ7 290 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 PCDHGA3Q9Y5H0 932 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 CFAP46Q8IYW2 2715 aa17.39■□□□□ 0.37
CLN3-239ENST00000628023 SUPT3HB4E1H0 165 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 SUPT3HO75486 399 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 KLHL2O95198 593 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 GRIA3P42263 894 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 MAGEA12P43365 314 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 GLRBP48167 497 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 HNMTP50135 292 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 DLG1Q12959 904 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 TGFBIQ15582 683 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 ZIC1Q15915 447 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 LRRC56Q8IYG6 542 aaPredicted RBP17.38■□□□□ 0.37
CLN3-239ENST00000628023 CENPLQ8N0S6 344 aaPredicted RBP17.38■□□□□ 0.37
CLN3-239ENST00000628023 ZSCAN1Q8NBB4 408 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 EPS8L3Q8TE67 593 aaKnown RBP17.38■□□□□ 0.37
CLN3-239ENST00000628023 PYCR2Q96C36 320 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 DPH7Q9BTV6 452 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 B3GNT4Q9C0J1 378 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 RRAGDQ9NQL2 400 aaPredicted RBP17.38■□□□□ 0.37
CLN3-239ENST00000628023 PCMTD2Q9NV79 361 aa17.38■□□□□ 0.37
CLN3-239ENST00000628023 SNRNP200O75643 2136 aaKnown RBP17.38■□□□□ 0.37
CLN3-239ENST00000628023 SYCE1LA8MT33 242 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 J3QKU1 62 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 KERAO60938 352 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 FGF5P12034 268 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 CD82P27701 267 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 ABATP80404 500 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 PRDX1Q06830 199 aaKnown RBP17.37■□□□□ 0.37
CLN3-239ENST00000628023 BPHLQ86WA6 291 aaPredicted RBP17.37■□□□□ 0.37
CLN3-239ENST00000628023 TMEM126BQ8IUX1 230 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 GPR135Q8IZ08 494 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 TCAIMQ8N3R3 496 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 OR8K5Q8NH50 307 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 OR56A3Q8NH54 315 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 ZUFSPQ96AP4 578 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 RNF31Q96EP0 1072 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 SCYL1Q96KG9 808 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 HAUS8Q9BT25 410 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 ULBP3Q9BZM4 244 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 FAM60AQ9NP50 221 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 SLC6A20Q9NP91 592 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 NUDT4Q9NZJ9 180 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 ANKMY1Q9P2S6 941 aa17.37■□□□□ 0.37
CLN3-239ENST00000628023 TARM1B6A8C7 271 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 B8ZZF3 427 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 STMND1H3BQB6 276 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 ERLIN1O75477 346 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 NUDT17P0C025 328 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 CSRP3P50461 194 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 ACAP2Q15057 778 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 TSNAXIP1Q2TAA8 658 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 PTCHD3Q3KNS1 767 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLN3-239ENST00000628023 ZC3H12BQ5HYM0 836 aaKnown RBP17.36■□□□□ 0.37
CLN3-239ENST00000628023 MANEAQ5SRI9 462 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 FCRL6Q6DN72 434 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 LCTLQ6UWM7 567 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 TIFABQ6ZNK6 161 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 ISCA2Q86U28 154 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 C17orf64Q86WR6 236 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 OR2W6PQ8NHA6 318 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 RHBDF1Q96CC6 855 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 ZNF501Q96CX3 271 aaPredicted RBP17.36■□□□□ 0.37
CLN3-239ENST00000628023 ARHGAP9Q9BRR9 750 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 SGPP1Q9BX95 441 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 SLC7A5P2Q9GIP4 190 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 CHRNA10Q9GZZ6 450 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 SERTAD3Q9UJW9 196 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 PLCL2Q9UPR0 1127 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 DYRK1BQ9Y463 629 aa17.36■□□□□ 0.37
CLN3-239ENST00000628023 TLDC2A0PJX2 215 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 CCDC189A1A4V9 331 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 CDH16O75309 829 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 STK17BO94768 372 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 WDR47O94967 919 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 MT-ND3P03897 115 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 MSL3P1P0C860 447 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 COL6A2P12110 1019 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 KRT15P19012 456 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 ITGA1P56199 1179 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 YBX1P67809 324 aaKnown RBP17.35■□□□□ 0.37
CLN3-239ENST00000628023 TGIF1Q15583 401 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 CDKL4Q5MAI5 379 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 SULT1C3Q6IMI6 304 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 ZFAND4Q86XD8 727 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 TDRPQ86YL5 185 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 PLD6Q8N2A8 252 aaKnown RBP17.35■□□□□ 0.37
CLN3-239ENST00000628023 MREGQ8N565 214 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 PDPRQ8NCN5 879 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 OR1L3Q8NH93 324 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 RHEBL1Q8TAI7 183 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 PLCD4Q9BRC7 762 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms