RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CSNK1G2-AS1Q8NCQ2 148 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 TDRD7Q8NHU6 1098 aaKnown RBP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 SPPL2AQ8TCT8 520 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 CCDC3Q9BQI4 270 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 FTOQ9C0B1 505 aaKnown RBP eCLIP2.07□□□□□ -2.08
SCN1A-208ENST00000625916 TLE6Q9H808 572 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 Q9N2K0 584 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 NLGN3Q9NZ94 848 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 GTF3C4Q9UKN8 822 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 PLAGL1Q9UM63 463 aa2.07□□□□□ -2.08
SCN1A-208ENST00000625916 TRBV4-1A0A0J9YWV2 114 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 FAM168BA1KXE4 195 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 PDHXO00330 501 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 C9P02748 559 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 HAPLN1P10915 354 aaPredicted RBP2.06□□□□□ -2.08
SCN1A-208ENST00000625916 LAMP2P13473 410 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 MFAP4P55083 255 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 NDUFV3P56181 108 aaKnown RBP2.06□□□□□ -2.08
SCN1A-208ENST00000625916 MAT1AQ00266 395 aaKnown RBP2.06□□□□□ -2.08
SCN1A-208ENST00000625916 HERC4Q5GLZ8 1057 aaPredicted RBP2.06□□□□□ -2.08
SCN1A-208ENST00000625916 DHRS7BQ6IAN0 325 aaPredicted RBP2.06□□□□□ -2.08
SCN1A-208ENST00000625916 FAM89BQ8N5H3 189 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 THAP8Q8NA92 274 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 PCYOX1LQ8NBM8 494 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 EXD1Q8NHP7 514 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.06□□□□□ -2.08
SCN1A-208ENST00000625916 PHYHIPLQ96FC7 376 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 CCDC34Q96HJ3 373 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 C7orf26Q96N11 449 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 RBM24Q9BX46 236 aaKnown RBP2.06□□□□□ -2.08
SCN1A-208ENST00000625916 TMX4Q9H1E5 349 aaPredicted RBP2.06□□□□□ -2.08
SCN1A-208ENST00000625916 ASB8Q9H765 288 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 DPP3Q9NY33 737 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 STK26Q9P289 416 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 CHKBQ9Y259 395 aa2.06□□□□□ -2.08
SCN1A-208ENST00000625916 GON4LQ3T8J9 2241 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 IGHV3-38A0A0C4DH36 116 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 TRBV5-5A0A0J9YX44 114 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 A0A1W2PQ72 361 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 O00370 1275 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 ATP1B1P05026 303 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 CHMP24386 653 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 HNRNPA3P51991 378 aaKnown RBP2.05□□□□□ -2.08
SCN1A-208ENST00000625916 MAMLD1Q13495 774 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 KIAA0141Q14154 515 aaPredicted RBP2.05□□□□□ -2.08
SCN1A-208ENST00000625916 RNASEH2BQ5TBB1 312 aaKnown RBP2.05□□□□□ -2.08
SCN1A-208ENST00000625916 TEX38Q6PEX7 206 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 CEP57Q86XR8 500 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 CCDC185Q8N715 623 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 OR4D10Q8NGI6 311 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 MORC4Q8TE76 937 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 SYN2Q92777 582 aaPredicted RBP2.05□□□□□ -2.08
SCN1A-208ENST00000625916 SAT2Q96F10 170 aaPredicted RBP2.05□□□□□ -2.08
SCN1A-208ENST00000625916 SFXN2Q96NB2 322 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 OLFM1Q99784 485 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 APOL2Q9BQE5 337 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 CCDC28BQ9BUN5 200 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 ARHGEF38Q9NXL2 777 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 ORC3Q9UBD5 711 aaPredicted RBP2.05□□□□□ -2.08
SCN1A-208ENST00000625916 TMEM98Q9Y2Y6 226 aa2.05□□□□□ -2.08
SCN1A-208ENST00000625916 SLC1A7O00341 560 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 HDAC3O15379 428 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 PRDM1O75626 825 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 FAM200BP0CF97 657 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 GP1BBP13224 206 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 ANPEPP15144 967 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 MYOGP15173 224 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 ZNF32P17041 273 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 NDST2P52849 883 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 ERVK-16P61578 105 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 IGLV3-21P80748 117 aaPredicted RBP2.04□□□□□ -2.08
SCN1A-208ENST00000625916 TMUB2Q71RG4 321 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 SERINC5Q86VE9 423 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 ADGRF2Q8IZF7 708 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 NDUFAF2Q8N183 169 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 C1orf131Q8NDD1 294 aaKnown RBP2.04□□□□□ -2.08
SCN1A-208ENST00000625916 OR4Q3Q8NH05 313 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 CHURC1Q8WUH1 139 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 USP6NLQ92738 828 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 RADILQ96JH8 1075 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 TBATAQ96M53 351 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 ZNF285Q96NJ3 590 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 MS4A10Q96PG2 267 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 CDRT15Q96T59 188 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 PSMD1Q99460 953 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 ITPAQ9BY32 194 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 OCR1Q9BZK8 76 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 ZMYND12Q9H0C1 365 aa2.04□□□□□ -2.08
SCN1A-208ENST00000625916 PNNQ9H307 717 aaKnown RBP2.04□□□□□ -2.08
SCN1A-208ENST00000625916 ZNF644Q9H582 1327 aaPredicted RBP2.04□□□□□ -2.08
SCN1A-208ENST00000625916 RUSC2Q8N2Y8 1516 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 TDRD9Q8NDG6 1382 aaKnown RBP2.03□□□□□ -2.08
SCN1A-208ENST00000625916 IGSF1Q8N6C5 1336 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 A0A1B0GVC2 190 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 TMEM221A6NGB7 291 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 TLX2O43763 284 aaPredicted RBP2.03□□□□□ -2.08
SCN1A-208ENST00000625916 AGR2O95994 175 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 RENP00797 406 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 IGKV3-11P04433 115 aa2.03□□□□□ -2.08
SCN1A-208ENST00000625916 AADACP22760 399 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms