RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PCM1Q15154 2024 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 EIF3FO00303 357 aaPredicted RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 UPK1AO00322 258 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 VILLO15195 856 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 ZSCAN9O15535 394 aaPredicted RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 B4GAT1O43505 415 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 AP2A2O94973 939 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 RASAL1O95294 804 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 SERPINA1P01009 418 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 CATP04040 527 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 ADRB3P13945 408 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 IL12RB1P42701 662 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 SP140Q13342 867 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 FXNQ16595 210 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 HKDC1Q2TB90 917 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 HNRNPA1L2Q32P51 320 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 FAM98BQ52LJ0 330 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 METTL2BQ6P1Q9 378 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 SPRED1Q7Z699 444 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 C1orf52Q8N6N3 182 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 LEMD2Q8NC56 503 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 HUS1BQ8NHY5 278 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 TIFAQ96CG3 184 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 NUS1Q96E22 293 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 FAM120BQ96EK7 910 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 PANX1Q96RD7 426 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 DKK3Q9UBP4 350 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 MYRFQ9Y2G1 1151 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 FADS3Q9Y5Q0 445 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 PLXNA2O75051 1894 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 PRR23AA6NEV1 266 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 H0YJX3 145 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 H3BNH8 94 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 RFXAPO00287 272 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 GNGT2O14610 69 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 SLC16A5O15375 505 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 PRNPP04156 253 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 ABCB1P08183 1280 aaPredicted RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 UMPSP11172 480 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 LAMP1P11279 417 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 COX7A2P14406 83 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 ZNF8P17098 575 aaPredicted RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 PTPN6P29350 595 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 KIR3DL1P43629 444 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 UGT8Q16880 541 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.28□□□□□ -0.76
CUX1-221ENST00000622516 GGTA1PQ4G0N0 100 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 CYBRD1Q53TN4 286 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 CWF19L1Q69YN2 538 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 TTC33Q6PID6 262 aaPredicted RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 APLFQ8IW19 511 aaPredicted RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 PAPD5Q8NDF8 572 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 WDR20Q8TBZ3 569 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 COQ10AQ96MF6 247 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 BDH2Q9BUT1 245 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 MRPS26Q9BYN8 205 aaKnown RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 MUC13Q9H3R2 512 aa10.28□□□□□ -0.76
CUX1-221ENST00000622516 SMPD3Q9NY59 655 aaPredicted RBP10.28□□□□□ -0.76
CUX1-221ENST00000622516 A0A0C4DFX4 3053 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 HOXC11O43248 304 aaPredicted RBP10.27□□□□□ -0.76
CUX1-221ENST00000622516 DIRAS1O95057 198 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 C1orf105O95561 183 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 CST1P01037 141 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 NTRK1P04629 796 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 RAP2AP10114 183 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 FCGR1AP12314 374 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 RPS13P62277 151 aaKnown RBP10.27□□□□□ -0.76
CUX1-221ENST00000622516 TBPL1P62380 186 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 ACSM2AQ08AH3 577 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 APOFQ13790 326 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 SPIDRQ14159 915 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 PON2Q15165 354 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 SLC36A3Q495N2 470 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 LRRC23Q53EV4 343 aaPredicted RBP10.27□□□□□ -0.76
CUX1-221ENST00000622516 CDKL4Q5MAI5 379 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 ACSM2BQ68CK6 577 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 C2orf16Q68DN1 1984 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 FAM83HQ6ZRV2 1179 aaPredicted RBP10.27□□□□□ -0.76
CUX1-221ENST00000622516 ZNF740Q8NDX6 193 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 OR7G3Q8NG95 312 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 C17orf50Q8WW18 174 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 OR8D1Q8WZ84 308 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 KLK6Q92876 244 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 SH3KBP1Q96B97 665 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 SLC47A1Q96FL8 570 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 CCDC138Q96M89 665 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 FOPNLQ96NB1 174 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 LGR4Q9BXB1 951 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 TRIM4Q9C037 500 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 SPNS1Q9H2V7 528 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 LIN28AQ9H9Z2 209 aaKnown RBP10.27□□□□□ -0.76
CUX1-221ENST00000622516 PNPLA3Q9NST1 481 aa10.27□□□□□ -0.76
CUX1-221ENST00000622516 TRBV5-3A0A0A0MS03 114 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 GNG14A0A1W2PPG7 69 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 FPGTO14772 594 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 SCAMP1O15126 338 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 CREG1O75629 220 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 POP7O75817 140 aaKnown RBP10.27□□□□□ -0.77
CUX1-221ENST00000622516 ZNF682O95780 498 aa10.27□□□□□ -0.77
CUX1-221ENST00000622516 TGFB1P01137 390 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms