RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MDH1P40925 334 aaKnown RBP13.81□□□□□ -0.2
UPF1-211ENST00000600868 LSSP48449 732 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 CCR8P51685 355 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 CCNG1P51959 295 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 PKNOX1P55347 436 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 YBX1P67809 324 aaKnown RBP13.81□□□□□ -0.2
UPF1-211ENST00000600868 BST1Q10588 318 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 TBCCQ15814 346 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 RBBP7Q16576 425 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 ZNF425Q6IV72 752 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 SLCO4C1Q6ZQN7 724 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 RGS9BPQ6ZS82 235 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 FAM20CQ8IXL6 584 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 LSMEM2Q8N112 164 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 OR4K1Q8NGD4 311 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 OR52B6Q8NGF0 335 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 ATP6V1E2Q96A05 226 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 ZUFSPQ96AP4 578 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 TGM7Q96PF1 710 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 MAP3K3Q99759 626 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 NUDT22Q9BRQ3 303 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 PELI2Q9HAT8 420 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 SLC6A20Q9NP91 592 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 TMEM184CQ9NVA4 438 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 THAP1Q9NVV9 213 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 CUEDC1Q9NWM3 386 aaPredicted RBP13.81□□□□□ -0.2
UPF1-211ENST00000600868 TOR4AQ9NXH8 423 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 ATXN7L1Q9ULK2 861 aaPredicted RBP13.81□□□□□ -0.2
UPF1-211ENST00000600868 SNX7Q9UNH6 387 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 PCNX2A6NKB5 2137 aa13.81□□□□□ -0.2
UPF1-211ENST00000600868 UNC13CQ8NB66 2214 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 H7BY64 318 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 PPP6CO00743 305 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 CASC3O15234 703 aaKnown RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 TOX3O15405 576 aaPredicted RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 PRAMEF4O60810 478 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 SNNO75324 88 aaPredicted RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 WFS1O76024 890 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 DKK1O94907 266 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 CLDN9O95484 217 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 EBLN1P0CF75 366 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 C1GALT1C1LP0DN25 315 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 CEACAM1P13688 526 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 TSPAN8P19075 237 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 CDH3P22223 829 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 GRIA3P42263 894 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 SLC1A6P48664 564 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 ABCE1P61221 599 aaKnown RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 GUCY1A3Q02108 690 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 IRF8Q02556 426 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 TRAF3Q13114 568 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 CHIT1Q13231 466 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 SPIDRQ14159 915 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 XKR6Q5GH73 641 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 ARL13AQ5H913 290 aaPredicted RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 PRAMEF9Q5VWM5 478 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 LIPJQ5W064 366 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 FIGLAQ6QHK4 219 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 ZNF574Q6ZN55 896 aaPredicted RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 FAM92BQ6ZTR7 304 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 GPRIN3Q6ZVF9 776 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 PRSS42Q7Z5A4 293 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 MILR1Q7Z6M3 343 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 TMPRSS11BQ86T26 416 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 TRIM73Q86UV7 250 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 FAM129CQ86XR2 697 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 L3MBTL4Q8NA19 623 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 LRRC8CQ8TDW0 803 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 GRAMD1AQ96CP6 724 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 PTCD3Q96EY7 689 aaKnown RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 MAGEB10Q96LZ2 347 aaPredicted RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 PPM1MQ96MI6 270 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 PRAP1Q96NZ9 151 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 TRAPPC9Q96Q05 1148 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 PLCD4Q9BRC7 762 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 DPH7Q9BTV6 452 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 PITHD1Q9GZP4 211 aaPredicted RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 ZMYND15Q9H091 742 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 CCDC134Q9H6E4 229 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 ACTR8Q9H981 624 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 EML4Q9HC35 981 aaKnown RBP13.8□□□□□ -0.2
UPF1-211ENST00000600868 TMEM9Q9P0T7 183 aa13.8□□□□□ -0.2
UPF1-211ENST00000600868 OR2A25A4D2G3 310 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 D6RAR5 112 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 UBFD1O14562 309 aaKnown RBP13.79□□□□□ -0.2
UPF1-211ENST00000600868 GIPC1O14908 333 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 ITM2AO43736 263 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 ESRRBO95718 433 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 CHRNGP07510 517 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 ST6GAL1P15907 406 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 MAGP20916 626 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 CXCR2P25025 360 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 ARRB2P32121 409 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 HNF4AP41235 474 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 CCR10P46092 362 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 ERVPABLB-1P60509 514 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 SH3BP2P78314 561 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 CSNK1G2P78368 415 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 RELAQ04206 551 aa13.79□□□□□ -0.2
UPF1-211ENST00000600868 LAPTM5Q13571 262 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms