RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ESR1P03372 595 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 PKMP14618 531 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 TPSB2P20231 275 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 EMP2P54851 167 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 CUL1Q13616 776 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 TPSAB1Q15661 275 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 THEMIS2Q5TEJ8 643 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 NEPROQ6NW34 567 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 DRICH1Q6PGQ1 229 aaPredicted RBP16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 ISLR2Q6UXK2 745 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 RNF44Q7L0R7 432 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 KCNMB4Q86W47 210 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 CSNK1A1LQ8N752 337 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 OR1N1Q8NGS0 311 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 HMGCLL1Q8TB92 370 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 PPP4R1Q8TF05 950 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 SMPDL3AQ92484 453 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 NACC2Q96BF6 587 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 MMABQ96EY8 250 aaPredicted RBP16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 C10orf90Q96M02 699 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 SAMD15Q9P1V8 674 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 PTGFRNQ9P2B2 879 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 TAC3Q9UHF0 121 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 ZGRF1Q86YA3 2104 aa16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 DIDO1Q9BTC0 2240 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-223ENST00000600552 NSG1A0A0A6YYJ2 146 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 VPS26AO75436 327 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 MATN4O95460 622 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 HPP00738 406 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 CATP04040 527 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 HEXBP07686 556 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 PAMP19021 973 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 CXCR2P25025 360 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 ARG2P78540 354 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 SARNPP82979 210 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 THOC5Q13769 683 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 HKDC1Q2TB90 917 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 PRMT9Q6P2P2 845 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 CENPUQ71F23 418 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 PLD3Q8IV08 490 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 KBTBD2Q8IY47 623 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 ZNF669Q96BR6 464 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 TCF12Q99081 682 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 FBXO6Q9NRD1 293 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 FAM114A2Q9NRY5 505 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 PCYOX1Q9UHG3 505 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 CDC14AQ9UNH5 594 aa16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 RUVBL1Q9Y265 456 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-223ENST00000600552 HEATR5BQ9P2D3 2071 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 OR2A25A4D2G3 310 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 LRRTM2O43300 516 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 USP1O94782 785 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 KRT14P02533 472 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 ANXA5P08758 320 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 CCDC175P0C221 793 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 PNLIPRP1P54315 467 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 DHX34Q14147 1143 aaKnown RBP16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 KCNJ11Q14654 390 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 TLR1Q15399 786 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 SYT16Q17RD7 645 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 TYSND1Q2T9J0 566 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 ANKRD22Q5VYY1 191 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 ZNF470Q6ECI4 717 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 KIAA0930Q6ICG6 404 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 PAQR7Q86WK9 346 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 SIRT6Q8N6T7 355 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 AMER2Q8N7J2 671 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 PRELID2Q8N945 189 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 ST6GALNAC3Q8NDV1 305 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 RERGQ96A58 199 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 SLC30A3Q99726 388 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 PLCD4Q9BRC7 762 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 CCDC68Q9H2F9 335 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 SYNPO2LQ9H987 977 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 ZKSCAN5Q9Y2L8 839 aa16.74■□□□□ 0.27
SHKBP1-223ENST00000600552 A0A0A6YYC8 382 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 IDSB3KWA1 339 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 I3L1I5 382 aaPredicted RBP16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 WFS1O76024 890 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 CELA2AP08217 269 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 OGNP20774 298 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 DCTP40126 519 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 TSFMP43897 325 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 CDK16Q00536 496 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 MFAP5Q13361 173 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 CTBP1Q13363 440 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 NAA25Q14CX7 972 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 PRTGQ2VWP7 1150 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 TTLL9Q3SXZ7 439 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 MFSD4BQ5TF39 518 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 ICE2Q659A1 982 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 FAM180AQ6UWF9 173 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 NDUFAF7Q7L592 441 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 CILP2Q8IUL8 1156 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 DENND6AQ8IWF6 608 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 REXO1L1PQ8IX06 675 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 BRIX1Q8TDN6 353 aaKnown RBP16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 HOMER3Q9NSC5 361 aa16.73■□□□□ 0.27
SHKBP1-223ENST00000600552 KLK4Q9Y5K2 254 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms