RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PRAMEF13Q5VWM6 474 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 ADGRD1Q6QNK2 874 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 LCTLQ6UWM7 567 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 C6orf15Q6UXA7 325 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 LRRC69Q6ZNQ3 347 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 OR4N4Q8N0Y3 316 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 ARHGEF39Q8N4T4 335 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 ESX1Q8N693 406 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 KCTD4Q8WVF5 259 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 RHBDF1Q96CC6 855 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 CCNL2Q96S94 520 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 TMEM79Q9BSE2 394 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 FANCEQ9HB96 536 aa18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 V9GYY5 206 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-221ENST00000599833 CCDC88CQ9P219 2028 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 K7ENP7 123 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 ZNF749O43361 778 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 CPNE3O75131 537 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 HIST1H2AGP0C0S8 130 aaPredicted RBP18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 MTHFD2P13995 350 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 HIST1H2ADP20671 130 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 ITGAXP20702 1163 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 SNRPNP63162 240 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 RELAQ04206 551 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 INO80CQ6PI98 192 aaPredicted RBP18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 TMEM126BQ8IUX1 230 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 DSELQ8IZU8 1212 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 PLD6Q8N2A8 252 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 MZB1Q8WU39 189 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 NXNL1Q96CM4 212 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 HIST1H2AHQ96KK5 128 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 OR2A5Q96R48 311 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 RUFY1Q96T51 708 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 HIST1H2AJQ99878 128 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 H2AFJQ9BTM1 129 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 LHX9Q9NQ69 397 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 FETUBQ9UGM5 382 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 IL17BQ9UHF5 180 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 SERTAD3Q9UJW9 196 aa18.68■□□□□ 0.58
SHKBP1-221ENST00000599833 A0A096LPK6 155 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 E7EQ34 232 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 POC1B-GALNT4F8VUJ3 575 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 HAT1O14929 419 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 OR2B3O76000 313 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 KRT37O76014 449 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 SHBGP04278 402 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 INHBAP08476 426 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 LTA4HP09960 611 aaKnown RBP18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 GGT5P36269 586 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 SERPINB8P50452 374 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 CSNK1G2P78368 415 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 TSTA3Q13630 321 aaPredicted RBP18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 PTCHD3Q3KNS1 767 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 RHBDD2Q6NTF9 364 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 WDR93Q6P2C0 686 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 FAM199XQ6PEV8 388 aaPredicted RBP18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 PDPRQ8NCN5 879 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 ABHD11Q8NFV4 315 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 OR4K1Q8NGD4 311 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 MED8Q96G25 268 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 STARD5Q9NSY2 213 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 CROTQ9UKG9 612 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 ACOT9Q9Y305 439 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 ASB1Q9Y576 335 aa18.67■□□□□ 0.58
SHKBP1-221ENST00000599833 A0A087X1B8 175 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 A0A0J9YVX5 310 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 EXOC1LA0A1B0GW35 172 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 H7BY64 318 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 ZSCAN9O15535 394 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 RFPL1O75677 317 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 CCNDBP1O95273 360 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 TFEBP19484 476 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 CCND1P24385 295 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 MSH2P43246 934 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 SERPINB9P50453 376 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 PRTGQ2VWP7 1150 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 ZC3H12BQ5HYM0 836 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 CDKL4Q5MAI5 379 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 MANEAQ5SRI9 462 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 CAPN13Q6MZZ7 669 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 FAM198BQ6UWH4 519 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 PLD3Q8IV08 490 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 DTWD1Q8N5C7 304 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 ZNF655Q8N720 491 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 AENQ8WTP8 325 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 CT55Q8WUE5 264 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 ATL1Q8WXF7 558 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 PRAP1Q96NZ9 151 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 GBP5Q96PP8 586 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 ZFYVE21Q9BQ24 234 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 TRIM54Q9BYV2 358 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 PCBD2Q9H0N5 130 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 SPNS1Q9H2V7 528 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 ALG9Q9H6U8 611 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 ACTR5Q9H9F9 607 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 SLC22A11Q9NSA0 550 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 ABCF3Q9NUQ8 709 aa18.66■□□□□ 0.58
SHKBP1-221ENST00000599833 PTBP2Q9UKA9 531 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms