RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ALKAL1Q6UXT8 129 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GK5Q6ZS86 529 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 ZBTB49Q6ZSB9 765 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 KCTD8Q6ZWB6 473 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 FKBP9P1Q75LS8 142 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 NANOGNBQ7Z5D8 188 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 TFAP2DQ7Z6R9 452 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 NLRP8Q86W28 1048 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CEP97Q8IW35 865 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 DCP1BQ8IZD4 617 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 SIX6OS1Q8N1H7 587 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CISD2Q8N5K1 135 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 SLC15A4Q8N697 577 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PQLC3Q8N755 202 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 EMC1Q8N766 993 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PIK3C3Q8NEB9 887 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 OR5B17Q8NGF7 314 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 WDR48Q8TAF3 677 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 STYXQ8WUJ0 223 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 TFAP2BQ92481 460 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 LPGAT1Q92604 370 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 NRGNQ92686 78 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 TANKQ92844 425 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GLMNQ92990 594 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PMEPA1Q969W9 287 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 ELMO3Q96BJ8 720 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 OTUB2Q96DC9 234 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SNRNP40Q96DI7 357 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 VMP1Q96GC9 406 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 TXNDC15Q96J42 360 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SENP8Q96LD8 212 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 MYRFLQ96LU7 910 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 NSMCE3Q96MG7 304 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GFM1Q96RP9 751 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 CPXM1Q96SM3 734 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GPR22Q99680 433 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CMKLR1Q99788 373 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CIB1Q99828 191 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 MCMBPQ9BTE3 642 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SNRNP25Q9BV90 132 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 MTMR12Q9C0I1 747 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 HAPLN2Q9GZV7 340 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 GBA3Q9H227 469 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 TPK1Q9H3S4 243 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SP140LQ9H930 580 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 NMRAL1Q9HBL8 299 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 LRRC4Q9HBW1 653 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 MCCC2Q9HCC0 563 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 FBXO8Q9NRD0 319 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CCM2LQ9NUG4 571 aaPredicted RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 TMLHEQ9NVH6 421 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 INTS10Q9NVR2 710 aaKnown RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 FBXL12Q9NXK8 326 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 SMPD3Q9NY59 655 aaPredicted RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 ADA2Q9NZK5 511 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PKD2L2Q9NZM6 624 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 SERGEFQ9UGK8 458 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 CD300AQ9UGN4 299 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PCSK1NQ9UHG2 260 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 ENPP5Q9UJA9 477 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PACSIN3Q9UKS6 424 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PSME2Q9UL46 239 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 NAALAD2Q9Y3Q0 740 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 TCAF1Q9Y4C2 921 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 KLF2Q9Y5W3 355 aaPredicted RBP4.05□□□□□ -1.76
LIG3-211ENST00000588713 SNX13Q9Y5W8 968 aa4.05□□□□□ -1.76
LIG3-211ENST00000588713 PRRC2AP48634 2157 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 CITO14578 2027 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 FLNAP21333 2647 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 A0A1W2PNR3 127 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ISPDA4D126 451 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PRORSD1PA6NEY8 169 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ERI2A8K979 691 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 KCNU1A8MYU2 1149 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 E7ENX8 843 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 M0QYV0 167 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PLOD2O00469 737 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ACKR2O00590 384 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 NTN3O00634 580 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 DLGAP1O14490 977 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PPEF2O14830 753 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 NPC1O15118 1278 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 OGTO15294 1046 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CLOCKO15516 846 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 TPD52L2O43399 206 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 NUAK1O60285 661 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 JRKO75564 520 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 TIPRLO75663 272 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SUPT7LO94864 414 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 IL18RAPO95256 599 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 TNNC2P02585 160 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 RPLP0P05388 317 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 UGT2B4P06133 528 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CHRNGP07510 517 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CISD3P0C7P0 127 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 UMPSP11172 480 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 VDRP11473 427 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CD19P15391 556 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CD33P20138 364 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms