RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 DNAJB5O75953 348 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 INMTO95050 263 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 FTH1P02794 183 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 TFPTP0C1Z6 253 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 LIPJQ5W064 366 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 ZBTB46Q86UZ6 589 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 PTOV1Q86YD1 416 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 SYT12Q8IV01 421 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 SCAMP4Q969E2 229 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 MAGEB10Q96LZ2 347 aaPredicted RBP22.08■■□□□ 1.13
VPS53-211ENST00000571805 BBS2Q9BXC9 721 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 CEP44Q9C0F1 390 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 PCDHGB1Q9Y5G3 927 aa22.08■■□□□ 1.13
VPS53-211ENST00000571805 GRM6O15303 877 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 TGM5O43548 720 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 XPNPEP2O43895 674 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 PRMT3O60678 531 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 BCAS1O75363 584 aaPredicted RBP22.07■■□□□ 1.12
VPS53-211ENST00000571805 ABRQ12979 859 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 CSTF3Q12996 717 aaKnown RBP22.07■■□□□ 1.12
VPS53-211ENST00000571805 KDM4DQ6B0I6 523 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 CNKSR3Q6P9H4 555 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 WDR20Q8TBZ3 569 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 GIPC3Q8TF64 312 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 ELMO1Q92556 727 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 WARS2Q9UGM6 360 aaKnown RBP22.07■■□□□ 1.12
VPS53-211ENST00000571805 KPNA5O15131 536 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 YY2O15391 372 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 UGT2B11O75310 529 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 CLPXO76031 633 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 KDELR2P33947 212 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 CLK3P49761 638 aaKnown RBP22.07■■□□□ 1.12
VPS53-211ENST00000571805 IL5RAQ01344 420 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 IRF8Q02556 426 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 GTF2H3Q13889 308 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 SPCS2Q15005 226 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 CRTC3Q6UUV7 619 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 Q6ZVU0 165 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 GALNT10Q86SR1 603 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 OR8J2Q8NGG1 315 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 CAPNS2Q96L46 248 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 DNAAF2Q9NVR5 837 aaKnown RBP22.07■■□□□ 1.12
VPS53-211ENST00000571805 ENPP5Q9UJA9 477 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 SLC25A13Q9UJS0 675 aa22.07■■□□□ 1.12
VPS53-211ENST00000571805 UGDHO60701 494 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 ZBTB11O95625 1053 aaPredicted RBP22.06■■□□□ 1.12
VPS53-211ENST00000571805 EMX1Q04741 257 aaPredicted RBP22.06■■□□□ 1.12
VPS53-211ENST00000571805 ZNF621Q6ZSS3 439 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 ANKRD33Q7Z3H0 272 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 TMEM25Q86YD3 366 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 ANKRD13BQ86YJ7 626 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 SLC15A4Q8N697 577 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 EMILIN2Q9BXX0 1053 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 RAD21L1Q9H4I0 556 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 SPATA6Q9NWH7 488 aaPredicted RBP22.06■■□□□ 1.12
VPS53-211ENST00000571805 VPS29Q9UBQ0 182 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 XYLBO75191 536 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 SLCO2B1O94956 709 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 VLDLRP98155 873 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 ZNF33BQ06732 778 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 SIM2Q14190 667 aaPredicted RBP22.06■■□□□ 1.12
VPS53-211ENST00000571805 CAPN13Q6MZZ7 669 aaPredicted RBP22.06■■□□□ 1.12
VPS53-211ENST00000571805 GDPD4Q6W3E5 623 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 HSD11B1LQ7Z5J1 315 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 FAR1Q8WVX9 515 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 C11orf24Q96F05 449 aaPredicted RBP22.06■■□□□ 1.12
VPS53-211ENST00000571805 CORINQ9Y5Q5 1042 aa22.06■■□□□ 1.12
VPS53-211ENST00000571805 MAGEB17A8MXT2 336 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 AXIN1O15169 862 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 DIRAS1O95057 198 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 EPN2O95208 641 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 ANGPTL1O95841 491 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 LAG3P18627 525 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 C21orf58P58505 322 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 POLR2LP62875 67 aaKnown RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 KCNC3Q14003 757 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 CTF1Q16619 201 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 LAIR1Q6GTX8 287 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 ERICH5Q6P6B1 374 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 VTCN1Q7Z7D3 282 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 B3GNT8Q7Z7M8 397 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 CLECL1Q8IZS7 167 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 ASZ1Q8WWH4 475 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 TRUB1Q8WWH5 349 aaKnown RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 FAM83DQ9H4H8 585 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.05■■□□□ 1.12
VPS53-211ENST00000571805 FAM120CQ9NX05 1096 aaKnown RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 RPS6KA6Q9UK32 745 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 CCL26Q9Y258 94 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 BTBD3Q9Y2F9 522 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 A0A1W2PQ67 120 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 ZNF99A8MXY4 864 aaPredicted RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 hCG_2039718K7EN88 272 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 COX7A2P14406 83 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 JUNDP17535 347 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 NR4A1P22736 598 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 DNAJA1P31689 397 aaKnown RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 KEAP1Q14145 624 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 XKR6Q5GH73 641 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 EEF1AKMT2Q5JPI9 291 aaKnown RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms