RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 ATG9BQ674R7 924 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 ACSM2BQ68CK6 577 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 PARM1Q6UWI2 310 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 TMPRSS11BQ86T26 416 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 ANKRD46Q86W74 232 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 TMEM132CQ8N3T6 1108 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 CBR4Q8N4T8 237 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 FGF14Q92915 247 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 GFM2Q969S9 779 aaKnown RBP17.54■□□□□ 0.4
SMPD3-211ENST00000568373 SEPHS2Q99611 448 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 INPP5KQ9BT40 448 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 SGPP1Q9BX95 441 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 KAT8Q9H7Z6 458 aaKnown RBP17.54■□□□□ 0.4
SMPD3-211ENST00000568373 SLC28A3Q9HAS3 691 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 V9GYQ6 96 aa17.54■□□□□ 0.4
SMPD3-211ENST00000568373 CKAP5Q14008 2032 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 ARHGAP10A1A4S6 786 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 MAGEB17A8MXT2 336 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 PCCBP05166 539 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 NPPBP16860 134 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 PTPN6P29350 595 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 KIR3DL1P43629 444 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 PNLIPRP1P54315 467 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 STARD3Q14849 445 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 ATP6AP1Q15904 470 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 ATAT1Q5SQI0 421 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 ADNP2Q6IQ32 1131 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 FAM83HQ6ZRV2 1179 aaPredicted RBP17.53■□□□□ 0.4
SMPD3-211ENST00000568373 CHERPQ8IWX8 916 aaKnown RBP17.53■□□□□ 0.4
SMPD3-211ENST00000568373 HUS1BQ8NHY5 278 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 CPPED1Q9BRF8 314 aaPredicted RBP17.53■□□□□ 0.4
SMPD3-211ENST00000568373 C9orf16Q9BUW7 83 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 CHID1Q9BWS9 393 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 ZDHHC5Q9C0B5 715 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 OR52A5Q9H2C5 316 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 PCM1Q15154 2024 aa17.53■□□□□ 0.4
SMPD3-211ENST00000568373 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.52■□□□□ 0.4
SMPD3-211ENST00000568373 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.52■□□□□ 0.4
SMPD3-211ENST00000568373 ELOVL7A1L3X0 281 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 GSTA4O15217 222 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 ETHE1O95571 254 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 B3GALT4O96024 378 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 PCNAP12004 261 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 CLCN2P51788 898 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 HNRNPFP52597 415 aaKnown RBP17.52■□□□□ 0.4
SMPD3-211ENST00000568373 CDK3Q00526 305 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 CAMK2GQ13555 558 aaPredicted RBP17.52■□□□□ 0.4
SMPD3-211ENST00000568373 MAP7Q14244 749 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 RNF220Q5VTB9 566 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 MED27Q6P2C8 311 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 DOK6Q6PKX4 331 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 UNC5DQ6UXZ4 953 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 FIG4Q92562 907 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 WDR34Q96EX3 536 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 RNF145Q96MT1 663 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 GBP5Q96PP8 586 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 CENPKQ9BS16 269 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 OAZ3Q9UMX2 235 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 DYRK1BQ9Y463 629 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 PRKAB1Q9Y478 270 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 NUMA1Q14980 2115 aa17.52■□□□□ 0.4
SMPD3-211ENST00000568373 PDLIM1O00151 329 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 MYO1DO94832 1006 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 PCDH8O95206 1070 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 LDLRP01130 860 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 LAMP2P13473 410 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 CDKN2CP42773 168 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 C21orf58P58505 322 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 TXNL4AP83876 142 aaKnown RBP17.52■□□□□ 0.39
SMPD3-211ENST00000568373 TAP2Q03519 686 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 SRSF11Q05519 484 aaKnown RBP17.52■□□□□ 0.39
SMPD3-211ENST00000568373 RPA4Q13156 261 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 RAB30Q15771 203 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 UGT8Q16880 541 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 WSCD2Q2TBF2 565 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 TMTC4Q5T4D3 741 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 OR4F3Q6IEY1 312 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.52■□□□□ 0.39
SMPD3-211ENST00000568373 GCNT7Q6ZNI0 430 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 AMZ2Q86W34 360 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 LRRC56Q8IYG6 542 aaPredicted RBP17.52■□□□□ 0.39
SMPD3-211ENST00000568373 PHACTR4Q8IZ21 702 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 ZNF513Q8N8E2 541 aaPredicted RBP17.52■□□□□ 0.39
SMPD3-211ENST00000568373 MFSD2AQ8NA29 543 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 SPDYE1Q8NFV5 336 aaPredicted RBP17.52■□□□□ 0.39
SMPD3-211ENST00000568373 REPS1Q96D71 796 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 AURKBQ96GD4 344 aaPredicted RBP17.52■□□□□ 0.39
SMPD3-211ENST00000568373 GDF15Q99988 308 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 TBCDQ9BTW9 1192 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 C8orf4Q9NR00 106 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 SH2B3Q9UQQ2 575 aa17.52■□□□□ 0.39
SMPD3-211ENST00000568373 RFXANKO14593 260 aa17.51■□□□□ 0.39
SMPD3-211ENST00000568373 ADH1BP00325 375 aa17.51■□□□□ 0.39
SMPD3-211ENST00000568373 GSNP06396 782 aa17.51■□□□□ 0.39
SMPD3-211ENST00000568373 FAM58BPP0C7Q3 252 aa17.51■□□□□ 0.39
SMPD3-211ENST00000568373 MYBPC1Q00872 1141 aa17.51■□□□□ 0.39
SMPD3-211ENST00000568373 TSTA3Q13630 321 aaPredicted RBP17.51■□□□□ 0.39
SMPD3-211ENST00000568373 NHSL2Q5HYW2 709 aa17.51■□□□□ 0.39
SMPD3-211ENST00000568373 CATSPEREQ5SY80 951 aa17.51■□□□□ 0.39
SMPD3-211ENST00000568373 SPRED1Q7Z699 444 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms