RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PCBP4P57723 403 aaKnown RBP18.75■□□□□ 0.59
CLN3-225ENST00000566824 SRSF6Q13247 344 aaKnown RBP18.75■□□□□ 0.59
CLN3-225ENST00000566824 FAM83EQ2M2I3 478 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLN3-225ENST00000566824 TECRLQ5HYJ1 363 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 CAPN13Q6MZZ7 669 aaPredicted RBP18.75■□□□□ 0.59
CLN3-225ENST00000566824 LCTLQ6UWM7 567 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 THOC6Q86W42 341 aaKnown RBP18.75■□□□□ 0.59
CLN3-225ENST00000566824 TDRPQ86YL5 185 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 MCATQ8IVS2 390 aaKnown RBP18.75■□□□□ 0.59
CLN3-225ENST00000566824 OR4N4Q8N0Y3 316 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 STAG3L4Q8TBR4 150 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 ATL1Q8WXF7 558 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 MTBPQ96DY7 904 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 PRAP1Q96NZ9 151 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 STARD5Q9NSY2 213 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 CD274Q9NZQ7 290 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 PTBP2Q9UKA9 531 aaKnown RBP18.75■□□□□ 0.59
CLN3-225ENST00000566824 ZMIZ1Q9ULJ6 1067 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 SLC22A14Q9Y267 594 aa18.75■□□□□ 0.59
CLN3-225ENST00000566824 A0A0J9YVX5 310 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 IQANK1A0A1B0GTG1 560 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 TLDC2A0PJX2 215 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 TMEM8BA6NDV4 472 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 SUPT3HB4E1H0 165 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 SUPT3HO75486 399 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 FKBP9O95302 570 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 DLGAP3O95886 979 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 NTRK1P04629 796 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 SBK3P0C264 359 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 EIF2S3P41091 472 aaKnown RBP18.74■□□□□ 0.59
CLN3-225ENST00000566824 HSPA7P48741 367 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 AGTR2P50052 363 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 CLN3Q13286 438 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 ACAP2Q15057 778 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 LGSNQ5TDP6 509 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 SH2D5Q6ZV89 423 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 CCDC91Q7Z6B0 441 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 DTX1Q86Y01 620 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 KLHDC8AQ8IYD2 350 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 PDPRQ8NCN5 879 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 TSNARE1Q96NA8 513 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 DCBLD2Q96PD2 775 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 TEFMQ96QE5 360 aaKnown RBP18.74■□□□□ 0.59
CLN3-225ENST00000566824 ULBP3Q9BZM4 244 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 AKIRIN1Q9H9L7 192 aaPredicted RBP18.74■□□□□ 0.59
CLN3-225ENST00000566824 PLCL2Q9UPR0 1127 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 PLAAQ9Y263 795 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 SEC16AO15027 2179 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 PKD1L2Q7Z442 2459 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 DSPP15924 2871 aaKnown RBP18.74■□□□□ 0.59
CLN3-225ENST00000566824 LRRC14BA6NHZ5 514 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 CCNDBP1O95273 360 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 PYGBP11216 843 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 CSNK1G2P78368 415 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 ABATP80404 500 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 MEF2AQ02078 507 aaPredicted RBP18.74■□□□□ 0.59
CLN3-225ENST00000566824 CATSPEREQ5SY80 951 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 C16orf46Q6P387 395 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 RNF44Q7L0R7 432 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 C17orf64Q86WR6 236 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 TMEM151AQ8N4L1 468 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 GALNT6Q8NCL4 622 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 RHEBL1Q8TAI7 183 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 NEIL2Q969S2 332 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 ZPBPQ9BS86 351 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 SPNS1Q9H2V7 528 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 WWOXQ9NZC7 414 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 NUDT4Q9NZJ9 180 aa18.74■□□□□ 0.59
CLN3-225ENST00000566824 TMEM184BQ9Y519 407 aaPredicted RBP18.74■□□□□ 0.59
CLN3-225ENST00000566824 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.73■□□□□ 0.59
CLN3-225ENST00000566824 MAP3K7O43318 606 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 PRAMEF4O60810 478 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 SCRG1O75711 98 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 WDR47O94967 919 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 STATHP02808 62 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 CCND1P24385 295 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 ITPKBP27987 946 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 GGT5P36269 586 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 HNMTP50135 292 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 ITGA1P56199 1179 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 VSX2P58304 361 aaPredicted RBP18.73■□□□□ 0.59
CLN3-225ENST00000566824 SNRPNP63162 240 aaKnown RBP18.73■□□□□ 0.59
CLN3-225ENST00000566824 PRAMEF9Q5VWM5 478 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 SULT1C3Q6IMI6 304 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 ADCK2Q7Z695 626 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 TMEM126BQ8IUX1 230 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 NKD1Q969G9 470 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 SCYL1Q96KG9 808 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 PCBD2Q9H0N5 130 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 TMEM216Q9P0N5 145 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 SNX7Q9UNH6 387 aa18.73■□□□□ 0.59
CLN3-225ENST00000566824 LAMA5O15230 3695 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 FEZF1A0PJY2 475 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 SRRM3A6NNA2 597 aaPredicted RBP18.72■□□□□ 0.59
CLN3-225ENST00000566824 STMND1H3BQB6 276 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 TK2O00142 265 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 MAP2K7O14733 419 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 ZNF749O43361 778 aa18.72■□□□□ 0.59
CLN3-225ENST00000566824 LCMT2O60294 686 aaKnown RBP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms